Pseudomonas sp. PAMC 25886, MUM_RS0109050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004504, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAGGGCCACGGCAAGCCGATCCTGCAATTCGGCAAGCTCAATGTCGGTTTGACCAAGATCGAACCCGCCGGCCAATACGCACTGAAATTGACCTTCGA CGACGGCCATGACAGCGGATTGTTCACCTGGGACTACCTCTATCAACTTGCCGTGCGTCAGGACGCGCTGTGGGCTGACTATCTTGCCGAGCTGAAAGCC GCCGGAAAAACCCGCGACCCGAGCCAGTCGGTCGTGCGGCTGATGCTCTAGCTCAGGCCTTTTGCTCATTAGTGGGCATTTTCTAATTCCATCTGCTTGA ATGCCCCTCTGTCGTGGCCAACGATTGGCCCGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAACTGGCAAGTTCCCTGCATTTGACGATGCGGTA TTAACGGTCACCCGAGCAGTAGTACCAGGCTGTGCTGTGTGGCAAGTAGTGGTACACAGCGGTACCCGGTACTCGTCTGTCGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>MUM_RS0109050
ATGAGTAACAAGAACAACGATGACTTGAAACGCCAGGCCTCGGAAAACACCCTGGGGCTGAACCCGATCATCGCGTTACGGAAAAAGGATTTACTGGCAT CCGCTCGGATGGTGCTGACCCAGGCCATCAAACAACCGTTGCACAGCGTCAAGCACGTCGCGCATTTTGGCGTCGAATTGAAAAACGTGGTGTTCGGCAA ATCACAGCTGACACCCGAGAGCGACGACCGTCGTTTCAACGACCCGGCGTGGACCCAGAACCCGCTCTACAAACGTTACCTGCAAACCTACCTGGCGTGG CGCAAGGAGCTGCACGACTGGATCGCCGACAGCAACCTGTCGGAACACGACATCAGCCGCGGCCACTTCGTCATCAACCTGATGACCGAAGCCATGGCAC CCACCAACAGCGCGGCCAACCCGGCGGCGGTCAAACGCTTCTTCGAGACCGGTGGCAAAAGCCTGCTGGATGGCCTGTCACACCTGGCCAAAGACATGGT GCACAACGGCGGCATGCCGAGCCAGGTCAACATGGGCGCCTTTGAAGTGGGCAAAAGCCTGGGCACCACCGAAGGCGCCGTGGTGTTTCGCAACGACGTG CTGGAGCTGATCCAGTACCGGCCGATCACCGAACAGGTGCACGAACGCCCGCTGCTGGTGGTACCGCCGCAGATCAACAAGTTCTATGTATTCGACCTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAATAACCAGCAGACGTTTATCGTCAGCTGGCGCAACCCGACCAAGGCCCAGCGCGAGTGGGGCCT GTCGACTTATATCGAGGCGCTCAAAGAAGCGGTGGATGTGGTGACGGCGATCACCGGCAGTAAAGACATCAACATGCTCGGCGCCTGCTCCGGCGGCATC ACCTGCACCGCGCTGCTGGGCCACTACGCGGCGCTGGGCGAGAAGAAGGTCAACGCCCTGACCCTGCTGGTGAGCGTGCTGGACACCACCCTGGACACCC AGGTGGCGCTGTTCGTCGACGAGCAGACCCTGGAGGCGGCCAAGCGCCACTCCTACCAGGCCGGCGTGCTGGAAGGCCGCGACATGGCCAAGGTGTTTGC CTGGATGCGCCCCAATGACCTGATCTGGAATTACTGGGTCAACAACTACCTGCTGGGCAACGAGCCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACCCGTCTGCCCGCCGCATTCCATGGCGACCTGATCGAGCTGTTCAAGAACAACCCGCTGGTGCGCGCCAATGCCCTGGAAGTGTGCGGCACGCCGA TCGACCTGAAGCAGGTGACCGCCGATATCTACTCCCTGGCCGGCACCAACGACCACATCACGCCGTGGCAGTCCTGCTACAAGTCGGCACAGCTGTTTGG TGGCAAGGTGGAGTTCGTACTGTCCAGCAGCGGGCATATCCAGAGCATCCTGAATCCGCCGGGCAACCCCAAGTCGCGCTACCAGACCAGCGATACGATG CCGGGCAAAGCGCTGGATTGGCAGGAAAATGCCACCAAGCACACTGATTCATGGTGGCTGCACTGGCAGGCGTGGCAGGCGGAGCGGTCGGGCAAGCTGA AAAAGGCGCCGACCGCACTGGGCAATAAAGCGTACGCAGCGGCTGAAGCGGCGCCGGGCACTTACGTACACGAAAGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGGAACGGGATCTACTGTAGGAGCTGGCTTGCCTGCGATGGCATCAACTCGGCGTGCCAGATACACCGCGGTGTCTGCATCGCAGGCAAGCCAGCTCC CACACTGACCGTTTTCCGGCAGGGAAATAGCGCCATTTCACAGGGTACGAGCATGCCGCAACCGTTCATCTTCCGTACCATCGACCTGGATGGCCAAGCC ATCCGCACGGCGGTACGCCCGGGCAAGCCTCACTTGACGCCGCTGCTGATTTTCAACGGCATCGGCGCCAACCTTGAGCTGGTGTTTCCGTTCGTCCAGG CCCTGGACCCGGACCTGGAAGTGATTGCCTTTGATGTGCCGGGGGTCGGCGGTTCGTCGACGCCCAGCCGGCCTTATCGTTTCCCTGGCCTGGCCAAGCT CACCGCACGCATGCTCGATTACTTGGACTATGGCCAGGTCAACGCGGTAGGCGTTTCCTGGGGCGGGGCACTGGCGCAGCAGTTTGCGTATGACTACCCG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKRQASENTLGLNPIIALRKKDLLASARMVLTQAIKQPLHSVKHVAHFGVELKNVVFGKSQLTPESDDRRFNDPAWTQNPLYKRYLQTYLAW RKELHDWIADSNLSEHDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDMVHNGGMPSQVNMGAFEVGKSLGTTEGAVVFRNDV LELIQYRPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNQQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVTAITGSKDINMLGACSGGI TCTALLGHYAALGEKKVNALTLLVSVLDTTLDTQVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIELFKNNPLVRANALEVCGTPIDLKQVTADIYSLAGTNDHITPWQSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKSRYQTSDTM PGKALDWQENATKHTDSWWLHWQAWQAERSGKLKKAPTALGNKAYAAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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