Pseudomonas sp. PAMC 25886, MUM_RS0109040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004504, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATATCCAGCCGTCCCACGTGGTGCGCATTGCGCCGATGATCTACGGCGGCTCCTTCCGCCGGGATTCGAAACTGGCCGCCGAACACGCCAGCAAAGTGC GTTCGGCGGGCAAGCTGGGTTACTACTGGCAACTGTTCGCCGGGCTTGGCTGGACCAGCATCCACTGGCTGCACAAGATCAAGCAGCCGACCCTGGTGCT GGCCGGCGATGACGACCCGCTGATCCCGCTGGTCAACATGCGCATGCTGGCGTGGCGCATTCCCAACGCCCAACTGCACATCATCGACGACGGTCATCTG TTCCTGATTACCCGGGCCGAGGCCGTGGCGCCGATCATCATGAAGTTTCTCCAGGAGGAACGCCTGCGGGCGGTGATTCACCCGCAACCCGCGCTTTAGA CGGTGGCGGTCAGGACGACCGCACCGCGCAACTTGGCCAGAACCGACTATGGTTCTGAATTGGCGTGCTTGTTGATGGCTTGACGAAGGAGTGTTGGCGC
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| DNA Sequence for Gene |
>MUM_RS0109040
ATGCGAGAAAGACCCGTATCGAACCCGGTGCCCACACCCGCCGCGTTCATCAATATTGAAAGTGCGATCACCGGCCTGCGCGGCCGGGATCTGCTGTCGA CCCTGCGCAGCGTCGCCGCACACGGCCTGCGCAACCCGGTGCACACCGCCCGTCACGCCCTGAAGCTGGGCGGGCAATTGGGCCGCGTGTTGCTGGGGGA AACGGTGCACGAGCCGAACCCGGCCGACAGCCGCTTCGCCGACCCGACCTGGCAGCTCAACCCGTTTTATCGGCGCAGCCTGCAAGCCTACTTGAGCTGG CAAAAACAAACCCGCCACTGGATCGACGACAGCAACCTCAGCCCCGACGACCGGGCACGGGCGCACTTTGCCTTTGCCCTGCTCAACGATGCGGTGTCCC CGTCCAACACGTTGCTCAATCCGCTGGCAATCAAGGAGCTGCTCAACTCCGGCGGCAACAGCGTGGTGCGTGGCGTCAGCAACCTGTTCGACGACCTGCT GCACAACAATGGCCTGCCGCGCCAGGTCACCAAGCAAGCCTTTGAAGTCGGCAAGACGGTAGCCACCACGCCCGGCTCGGTGGTGTTTCGCAATGAGCTG CTGGAGTTGATCCAGTACAAGCCCATGAGCGAAAAACAGTACGCCAAGCCGCTGCTGGTGGTGCCGCCGCAAATCAACAAGTACTACATTTTCGACCTGA GCCCGAACAACAGCTTTGTCCAGTTCGCCCTGAAAAATGGCCTGCAGGTGTTTATGGTCAGCTGGCGCAACCCGGACGTACGGCATCGGGAGTGGGGCCT CTCCACCTACGTCGCCGCCCTGGAAGAAGCGCTGAACGTGTGCCGCGCAATCACCGGCGCCCGCGAGGTCAACCTGATGGGCGCCTGCGCCGGAGGCCTG ACCATCGCCGCGCTGCAAGGCCATCTACAGGCCAAGCGTCAGCTGCGCCGCGTCTCGAGCGCCAGCTACCTGGTGAGCCTGCTGGACAGCCAGATCGACA GCCCCGCCACCCTCTTCGCCGACGAACAGACCCTGGAAGCCGCCAAGCGCCGCTCGTATCAGCAAGGCGTACTCGACGGCCGGGACATGGCCAAAGTGTT CGCCTGGATGCGCCCCAATGACCTGATCTGGAATTACTGGATCAACAACTACCTGCTGGGCAAGGAACCGCCGGCGTTCGACATCCTGTACTGGAACAAC GACAACACCCGCCTGCCCGCCGCGCTGCATGGCGACTTGCTGGACTTCTTCAAACACAACCCGCTGAGCCACCCCGGTGGCCTGGAAGTCTGCGGCACAC CCGTCGACTTGCAGAAGGTCACGGTGGACAGCTTCAGCGTGGGCGGGATCAACGACCACATCACGCCGTGGGATGCGGTGTACCGCTCCACCCAACTGCT GGGCGGCGACAAGCGCTTCATTCTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCCAAGGCCAACTACGTCGAAAACCTCAAG CTGAGCAGCGACCCGCGCGCCTGGTACTACGACGCCAATCACGTCGAAGGCAGCTGGTGGCCCAATTGGCTGGCGTGGATCCAGCAACGTTCCGGGGTGC AGCGCGAAACCCTGACCGCCCTGGGCAACCAGAATTACCCACCGATGGAAGCGGCGCCGGGCACGTATGTGCGGGTCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCAACGACGATTTTAAGAAGACTGGATGAAGACCCGCGACCGTATCCTTGAATGTGCCTTGCAGTTGTTCAACCACAAGGGCGAGCCGAACGTGTCGA CCATGGAGGTGGCCAATGAAATGGGGATCAGCCCGGGCAATCTCTATTACCACTTCCATGGCAAGGAGCCGCTGGTGCTCGGGCTGTTCGAGCGTTTCCA GGCCGAGTTGGCGCCGTTGCTCGACCCGCCTGAAGACGCTCAACTGGCGGCCGAGGATTACTGGCTGTTCCTGCACCTGATCGTGGAGCGCATGGCGCAC TATCGGTTTCTGTTCCAGGACTTGTCGAACCTGGCGGGACGCTTGCCGAAACTGGCCAAGGGCATTCGCAACCTGCTGACAGCGCTCAAGCGCACGCTGG CCTCGTTGCTGGCCCGGCTAAAGACGGATGGGCAATTGGTCAGTGATACCCAGGCATTGGGGCAGTTGGTGGAACAGATCACCATGACCCTGCTGTTTTC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRERPVSNPVPTPAAFINIESAITGLRGRDLLSTLRSVAAHGLRNPVHTARHALKLGGQLGRVLLGETVHEPNPADSRFADPTWQLNPFYRRSLQAYLSW QKQTRHWIDDSNLSPDDRARAHFAFALLNDAVSPSNTLLNPLAIKELLNSGGNSVVRGVSNLFDDLLHNNGLPRQVTKQAFEVGKTVATTPGSVVFRNEL LELIQYKPMSEKQYAKPLLVVPPQINKYYIFDLSPNNSFVQFALKNGLQVFMVSWRNPDVRHREWGLSTYVAALEEALNVCRAITGAREVNLMGACAGGL TIAALQGHLQAKRQLRRVSSASYLVSLLDSQIDSPATLFADEQTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWINNYLLGKEPPAFDILYWNN DNTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPVDLQKVTVDSFSVGGINDHITPWDAVYRSTQLLGGDKRFILSNSGHIQSILNPPGNPKANYVENLK LSSDPRAWYYDANHVEGSWWPNWLAWIQQRSGVQRETLTALGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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