Pseudomonas sp. PAMC 25886, MUM_RS0108435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004500, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGGCGATGAGCGCGGCTTTTTTTATGAAAGTTTCAACGCCCGGGCTTTCGCCCAGGCCACCGGTTTGCAACAAGAGTTTGTGCAGGACAACCATTCGC GCTCTCAAAAGGGTGTGCTGCGTGGCCTGCATTACCAAGTGGAACACGCTCAAGGCAAGCTGGTGCGTGTAACCGCCGGTGAAGTGCTGGACGTGGCGGT GGATATCCGTCGCGGCTCACCACTTTTCGGCAAATGGGCCAGCGTGCATTTATCCGCGGAGAATAATCGCCAACTGTGGATTCCACCGGGATTTGCCCAT GGATTTGTGGTGCTCAGCGACTACGCCGAGTTCCTCTACAAAACCACGGATTACTACACGCCCTCGGCAGAACGCTGCATTCGCTGGGACGATCCTGACC TCAACATCGACTGGCAACTGACCGGTACGCCAACCTTGTCCGCCAAGGACCAGAACGGTAAAAGCCTGAAAGAAGCCGACCTGTTCCCATGAACAGCCCG
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| DNA Sequence for Gene |
>MUM_RS0108435
TTGAAAATCCTCATCAGCGGCCAACACGGCCAGGTCTCCCGGGAGCTGCAACAGCGCCTTCAGGGCCTGGGCGAGTTGATCGTGTTGGGCCGCGACCAGC TTGACCTGACCCGTCCCGAGCAAATCCGCCAGCAAGTGCGCGCCCATCGCCCGGGCCTGATCATCAACGCAGCCGCCCACACCGCCGTCGATCAAGCCGA GAGCGAGCCGGACGTGGCCTTCGCCATCAACGCCACCGCGCCCGGCGTCTTCGCCGAGGAAGCCAGGGCACTGGGCATTCCGTTGATCCACTACTCCACC GACTACGTGTTCGACGGCAGCAAGGCCGCGCCCTACAACGAGGACGATGCCACCCACCCGCTGGGCGTCTACGGCGCGAGCAAGCTGGCAGGCGAACGGG CGATCGTGGCCGTCGGCGGTGAGCACCTGATTCTGCGCACCAGTTGGGTCTACTCGACCCACGGCAAGAACTTCTTGCTGACCATGCAGCGCCTGCTGCA GGAAAAGCCGCACATGCGCATCGTCGCCGACCAGATCGGCGCGCCAACCTGGGCCGGCACCATCGCCAACAGTACACGCGCGCTGATCGAACACTGGCAA GCGGGCCAGGCCGGGGCTTGGGGCGTCTATCACCTGACGGCCCAGGGCGAGACCTCCTGGTTCGGCTTTGCCCAGGCCATTGGTGAGCAATTGCGCATCG AAGGCAAGGCGTGCGCCGAACTGGAAGCGATCCCTTCCAGCGCCTATCCAACGCCCGCCAAACGCCCGCTGAACTCGCGCCTGGATTGCAGCCGACTGCA ACAACAGTGGCACGTCTCGCAGCCGCAATGGCACGACGCATTACGCGAGTGTCTTGCCGAGCAGGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATAATGCGCCTGTACCCACAGGCGCACGACTCCCATGACTCCACCCCTTCCGCGAAGACCCCGCTGGCGCAGCCTGGCCTTGCTGGCGCTTTGCCTGG CACCGCTGTTGTGGCCACTGGAGCACTTGGCCGAGCGTTATTACCGCAGCGAACTGGCCGGGCAGAACCGCCAGACGCTGGACCTCTACGTCGCCAACCT GCTGGGCACCCTGCATCGCTACGAAGTGCTGCCGCAGATCCTCGGCGACCTGCCGGCCCTGCGCACCGCCATCGACGCACCTCACGTCAGCACCAACCTG GTCAACGCCAACCACCTGCTCAAGGACGTCGCCGCCCAGGCCGGGGTGGAAGTGATGTACCTGATGGACACCACCGGCAAGACCCTCGCCGCGTCCAATT GGGACAAACAGGACAGCTTCGTCGGGCGTAATTTTTCCTTCCGTCCCTACTTCAGCGAAGCCATGGCCGGGCGCCTGGGACGATTCTTCGGGCTGGGCAC
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MKILISGQHGQVSRELQQRLQGLGELIVLGRDQLDLTRPEQIRQQVRAHRPGLIINAAAHTAVDQAESEPDVAFAINATAPGVFAEEARALGIPLIHYST DYVFDGSKAAPYNEDDATHPLGVYGASKLAGERAIVAVGGEHLILRTSWVYSTHGKNFLLTMQRLLQEKPHMRIVADQIGAPTWAGTIANSTRALIEHWQ AGQAGAWGVYHLTAQGETSWFGFAQAIGEQLRIEGKACAELEAIPSSAYPTPAKRPLNSRLDCSRLQQQWHVSQPQWHDALRECLAEQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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