Pseudomonas sp. PAMC 25886, MUM_RS0107665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004499, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAATGCCCTCTCCCGAGTACGCAGTACAGACGCTTTACAGCAACCATAACGGCTGGCTCAACACCTGGCTGCGCAGCCGCCTGGGTAACACCGCGGATG CTGCGGACCTGGCCCAGGACACGTTCGTGCGCCTGCTGCAAAAAACCGAACGCTTCGAACTCAAGGCCCCTCGCGCCTTCCTGCGCACCATCGCCCGGGG CTTGGTGATTGATCACTGGCGTCGCGAAGAAATCGAACGGGCTTATCTGGAATCCATCGCCCACTTGCCCGAAGCCGTGGCACCGAGCGCTGAGGAGCGT GCGTTGATTCTGGAATTGCTGGAGTCCATCGCCCGGCTTCTGGACGGGCTCAAGCCCAAGGTGCGTAAGGCGTTTTTACTGGCTCAGTGCGACGGCCTGA CTTACAAGCAGATTGCGCAGCAGATGGGCGTGTCGTTGCGCTCGGTGGAGCGGTATGTCGCCGAGGCGCTGTATCACTGTTATGTGCTGCGGTATGAGGC
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| DNA Sequence for Gene |
>MUM_RS0107665
ATGACCCCGATGGATAACACTGCACGCGCAGGAATCGATCCGCAGGTGGTGAAACAGGCCATCAGCTGGATGCTGCGCTTGCGTAACAATCGCGCCAATC TCCGCCTGAAGGCGCAATGCGAGCACTGGCGCGAGGCTCATCATGAACACGAGCTGGCCTGGCAACGCGTGCAAGCGCTGCAACATGAATTGAGCAGCCA GCTGGCGGCAGTTCCCGGGGCCCATGTGGCGCTGGAGAACAGCGCCCAGCGGCTCGGGCGCCGGCAAGCGTTGAAGGTGTTGTCGGGTGTGGTGTTGATC GGTTCGGCGGCCTGGGTCAGCAGGGACCTTACCGGCTGGCAACGCTGGACCTCGGACCTGGCCACCGCCACCGGCGAACGCCGCAGCGTGCAATTGCCGG ATGGCACACGCCTGCAACTCAATACCGACAGCGCGGTGGACCTGGACTTCAACCCGCAGCAACGCTTGATCACGCTGGTACGCGGGGAAATCCTGGTGAC CTGCGGCGCTGCTGCGACGGCACCGCTGCTGGTTCGCACGCGTCATGGTTTGTTCGAAGGCATCGACGGGCGGTTCGTGGTGCGCCAGGACAGCGATTGC ACTCGCTTGAGTGTGGCGTCAGGCAATGTGGCGATTCATTCACCCCATACGGCGGACGGCCTGTTCACTCAGGTGCATGCAGGAGAAAGCTACCTGGTTC GTCAGAACGAGGCCATTCTGGCGCCGCCTTTGGATATGGATGCCGGGGCCTGGGCGGATGGATTGATCGTCACCCGCAACATGCGTCTTGCCGACTTCCT GGCAGAGGTGGGGCGCTATCGCCATGGTTACCTGGGCTGCTCAAGCGATATCGCAGACTTGCGCCTGTCCGGCGTTTTTCGGTTGGAAGACACCGAGAAA CTGTTGGCGATCCTTCCGCAGACGTTGCCTGTGCGCCTGCGCTATCGCACCCGCTGGTGGGTAAGCCTGGAGCGTCAGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTATTGTTGTCGCGCCCGATTTATTTTTGGCGGCTTTTTTCCGTGAGTCCGGCTTAGACAGTAAGCATTTCAATCTGCCTTCAGCGACCTCTACGGACCT CGATAATGACTGTGCGTTTTTTCAGTAACTCACCCTCTTCCTACCCTTTGCTCGGTAAAGCCGTACGTGCAGCGCTGCTGTCGACCACGATGGGCATCGG CTTGTTGCCGATGGCCGGGGTCGCGGCGGATAGCGGGGTCGAGCGCATCAGCCAGCGCTATGACATCCCTGCCGGGCCGCTGAGCGATGTGCTCAACCAG TTTGCCCGTCAGGCAGGCATCACCCTTTCCAGCACGCCTGCGCAGACTCAGGGCCGCCAGTCTGCCGGGCTGCACGGTGAGTATTCCGCGGAGCAGGGCC TGAGCCAGTTGCTCAATGGATCCGGCTTGCAGGCACAGCCACAGGATGACGTGAGTTTCGTGTTGCAGGCCCAGCCCGAAAGTGAAGCGCTGACCTTACC
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| Amino Acid Sequence |
>peptide ABC transporter substrate-binding protein
MTPMDNTARAGIDPQVVKQAISWMLRLRNNRANLRLKAQCEHWREAHHEHELAWQRVQALQHELSSQLAAVPGAHVALENSAQRLGRRQALKVLSGVVLI GSAAWVSRDLTGWQRWTSDLATATGERRSVQLPDGTRLQLNTDSAVDLDFNPQQRLITLVRGEILVTCGAAATAPLLVRTRHGLFEGIDGRFVVRQDSDC TRLSVASGNVAIHSPHTADGLFTQVHAGESYLVRQNEAILAPPLDMDAGAWADGLIVTRNMRLADFLAEVGRYRHGYLGCSSDIADLRLSGVFRLEDTEK LLAILPQTLPVRLRYRTRWWVSLERQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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