Pseudomonas sp. PAMC 25886, MUM_RS0106450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004497, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGATTTGCCGCTGTTCATGAGCGTGGGCAACGGCAAAACCGACTTCACATTGGCCGACAGCGCCCCGGTGCTGGCGGTGCGCTGCGTCGCCGGGCCGA GCCGACCGCGCGCCAGCCATGCCCATGACGCCAAGGCCTGGCGCCTGATCAGCCAGTTGTCGTTGAACTACCTGTCGTTGAGCGAGCAAGGCCAGGGCGC CGCCGCACTGCGCGAGCTGCTGCGCCTGTATGGCGACAGCAACGATGCCGCCCTGCAACTGCAGATCGAAGGCCTGCGCGAGGTCCGCAGCAAAGCGGTG ACCCGCCGCCTGCCGATGCCCGGCCCGATCGTGTTTGGCCGGGGCCTGGAAATCACCCTGGAATTTGATGAAAACGCGTTCCGCGGTACCGGCGTGTTCC TGCTCGGTGCGGTGTTTGAACGGTTCCTGGCACGCTACGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
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| DNA Sequence for Gene |
>MUM_RS0106450
ATGGAAAGCCAAGCCCGGACGCCGTCCGACCCTGTGAGTACCCTGGATGCGATGCATCAGGAGCCCTGGGAATATGACTTCTTCCAGGCGCTGCGTCGTA TCGAGTGCGAATCGCCTGGCCTGCCACGCCTGGGGCATTCCCTGCGCCTGGCAGATGATCCGTTGCGCCTCGGGCAGCAGGCCGATTGCACCTTTGCCCC GGCCACACTGGCGTCGGTCGAGCCCGGCGCTGAAGGCAAACCGGCACGGCTGGAGCAGTTCTTTTTTGGCCTCGGTGGCCCCAACGGCCCGCTGCCGCTG CACATTACCGAGTACGTGCGCGAGCGCCAGCGCAACAACGCCGACAGCACCAGCAAGCGCTTCCTGGATGTGTTCCACCACCGTCTGCTGACCCTGTTTT ATCGGGCCTGGGCCGAGGCGCGGCCCACCGTCAGCCATGACCGCCCGAACGATGATTACTGGTCGGCGCGCCTCGCCGCCTTGAGCGGTCGCGGTACACC GAGCCTGCTCAACCAGGGCCTGATCCCCGACACGGCGAAACTGCATTACAGCGGGCATCTGTCGGCGCAAACCCGCTACCCGGATGGCCTCAAGGCGATT CTCGGTGAGTACTTCGGCCTGCCGGTGGAGATCGAAGAGTACGTCGGCCAATGGCTGGAACTGCCCGAGCGCAGCCGCGTGAGTGTCAGCGCCAATCAGT TGGGCGTGGACTTTTGCCTGGGCAGCCATGTGTGGGACCGCCAGCACAAATTCCGTATCCGCCTCGGCCCACTGAAGCTCGATGACTACATGGGCATGTT GCCCGGCAGCCAGCCGTTCAACGAGCTGGTGGCCTGGGTCGCCGAATACCTGGGCCATGAACTGGACTGGGACCTGAACCTGGTTTTGCAACAACCCGAA GTGCCGGCGCTGCAACTCAATGGCCAGTTCCGCCTGGGCTTCAACACCTGGCTCGGCCAACCCGGGCACGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGAACACGCCAACACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAGGCCATCGAAGCCGCCACCGTGTTCTGCAAGCTGCGGGGCAACCCGTACGTG GAACTGGCCCACTGGTTTCACCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATTCGTCAGTTCAACGTCGAGCCGGCGCGCCTCGCCCGCG ACCTGACCGAAGCCCTGGACCGCCTGCCCCGTGGCTCGACGTCGATCACCGACCTGTCGTCCCACGTGGAAGAAGCCGTCGAACGTGGCTGGGTCTACGG CAGCCTGATGTTTGGCGAAAGCCAGGTGCGCACCGGTTACCTGGTGCTGGGGATTCTCAAGACGCCGAGCCTGCGCCACGCGCTCCTGGGGTTGTCGGGG GAGTTCGACAAGATCAAGGCCGAAGCCCTGAGCGAGCGCTTCGATGAATACGTCGGCGACTCGCCCGAAAATGCCTTGAGTGCCAGCGACGGTTTCAACG
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| Amino Acid Sequence |
>type VI secretion protein
MESQARTPSDPVSTLDAMHQEPWEYDFFQALRRIECESPGLPRLGHSLRLADDPLRLGQQADCTFAPATLASVEPGAEGKPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKRFLDVFHHRLLTLFYRAWAEARPTVSHDRPNDDYWSARLAALSGRGTPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LGEYFGLPVEIEEYVGQWLELPERSRVSVSANQLGVDFCLGSHVWDRQHKFRIRLGPLKLDDYMGMLPGSQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALQLNGQFRLGFNTWLGQPGHDANDLILARHYAEHANTSRNPEHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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