Pseudomonas sp. PAMC 25886, MUM_RS0106420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PAMC 25886 ctg7180000004497, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGGCCAATAGCCATCACTCCCTGTTCCATGGACTTTTCAGGGCACTGGCCAGGGGTAATCTTGTGATAACTAGTGATAGTCAAGCACAGCGACATCTTG CCTCCTTGCTGATACTTCGCGCGCGGCCATCTCCAGGGAGAACGGCTCCCGAGAGATCCACGACAGATCCTTCCAATACCTTGAAAGCCTGCTTCAACCC GCGTAATTGCTGATCTTAACCGGCCTCTATGACAAAAATCCTGCCCCGGCACCTGCTTCGACTGATCAGTCGCACAAGATGTTAAGCACCGCACATCTGT CATAGAGGGCGAATAGCTTACCTTGACAAGGCATAAGTACTACACCAAAAATGCACAACTTCTTGAACACCAATGATGGCACTTTGAAATCAGCATGATG TCAAAGCGCTTAATATGACCAAGAAAACATGCAAAGTTCCTCGCGCAACTAATGCATGAATTGCCCGCCATCTAACGGGCTGATAGGGAGATCGAATTTA
DNA Sequence for Gene
>MUM_RS0106420
GTGGATGTGCCTTTGCTGCTCGCCGCCGTTTCCGCGACTTCGCCTTGTGGCGAAGACTTGGAATATGACGCCGATTATTTGCATCTTGAGCGTGCCGCAC AGGGCCAACCCGAGCGCAGCATGGGCGACTCGATCCTGCCTGCCGAACCTCCGGAATGGCGCAGCATCCAGCAGCAAAGCCTCGACCTCCTGCAGCGCAG CAAAGACCTGCGCATCACCCATTTCCTGTTGCAAAGCGCCCTCGCCCTCCAGGGTATTGCGGGGCTTGCCGACGCGCTCACACTGATCAACGCGCTGCTG CGCGAATACTGGGCCGACCTGCATCCGCGCCTGGATGCCGATGACGACAACGACCCCACCGTGCGCATCAACGCCCTCAGCGGCGTGACCAGCGACGCGA ACATCCGCCTGCTGCGCGAAGCCATTCTCACTCGCTCGCGCACCTTCGGCCCCGTCAGCCTGCGCGCCGCGCTGAATGCCAGCGGGCTGCAACCTTTCCC CGGCGAAAACCTCGGTGCCGAACAGCTCAACGGGGCTTTCCTCGACAGCGACGCCGAGCAACTGCAAGCCACCCGCGACGCGCTGAACGCCGCCCGTACG GCCTGCGAAGCCATCGAACAACACGTCAGCGACCAGGTCGGTTCCGCCCAGGGCGTGGACCTCGGCCCCTTGAAGCAACTGCTCAAGCAGGCCGTGCAGA TACTCAATCAATACGCCCCGCACAGTGGCGCCGCCAGCGAGCCCGAGGTTGTCAGTGACGACAATGCCCCCTCGGTTGAATACGCCGCCGCGCCCGTTGC AGCACGCCCCAACGGCGACATCGCCAGCCGCGATGAAGTGCTGCGCAGCCTCGACAAAATCCTTGCGTACTACACCCGGCATGAGCCTTCGAGCCCGCTG CCGGTGTTGTTGAACCGGGCGAAGAATCTGGTGCACGCCGACTTTGCGGCCATCGTGCGCAACCTGATTCCGGACGGCATGTCCCAATTTGAAAATCTGC GTGGGCCGGACAGCGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCGTACGGATCGCGCAGTTACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGTGCGC CTCGGGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTCATGGGCGTGATGGCCGACCTCGCCGGCAAGCC CGCCGAGCCTCTGGCGCCTGTGGCCGACCGCAAGTTCCTTGAAGTGGACGTCGACAACTTCGACTCGCGCCTCAAGGCCATGCAGCCACGCGTCGCGTTC CACGTGCCCAACGAGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATGGACGACTTCAGCCCCGCCGCCGTGGCGCGCAAGGTCG ACTCGCTGAACAAGCTGCTCGAAGCCCGCACGCAACTGGCCAACCTGCTGACCTACATGGACGGCAAGACCGGCGCTGAAGAAATCATCATGAAAGCAAT
Amino Acid Sequence
>type VI secretion protein ImpA
MDVPLLLAAVSATSPCGEDLEYDADYLHLERAAQGQPERSMGDSILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSALALQGIAGLADALTLINALL REYWADLHPRLDADDDNDPTVRINALSGVTSDANIRLLREAILTRSRTFGPVSLRAALNASGLQPFPGENLGAEQLNGAFLDSDAEQLQATRDALNAART ACEAIEQHVSDQVGSAQGVDLGPLKQLLKQAVQILNQYAPHSGAASEPEVVSDDNAPSVEYAAAPVAARPNGDIASRDEVLRSLDKILAYYTRHEPSSPL PVLLNRAKNLVHADFAAIVRNLIPDGMSQFENLRGPDSE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site