Pseudomonas sp. PAMC 25886, MUM_RS0106415
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004497, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCACGCTCAAGATGCAAATAATCGGCGTCATATTCCAAGTCTTCGCCACAAGGCGAAGTCGCGGAAACGGCGGCGAGCAGCAAAGGCACATCCACTAAA TTCGATCTCCCTATCAGCCCGTTAGATGGCGGGCAATTCATGCATTAGTTGCGCGAGGAACTTTGCATGTTTTCTTGGTCATATTAAGCGCTTTGACATC ATGCTGATTTCAAAGTGCCATCATTGGTGTTCAAGAAGTTGTGCATTTTTGGTGTAGTACTTATGCCTTGTCAAGGTAAGCTATTCGCCCTCTATGACAG ATGTGCGGTGCTTAACATCTTGTGCGACTGATCAGTCGAAGCAGGTGCCGGGGCAGGATTTTTGTCATAGAGGCCGGTTAAGATCAGCAATTACGCGGGT TGAAGCAGGCTTTCAAGGTATTGGAAGGATCTGTCGTGGATCTCTCGGGAGCCGTTCTCCCTGGAGATGGCCGCGCGCGAAGTATCAGCAAGGAGGCAAG
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| DNA Sequence for Gene |
>MUM_RS0106415
ATGTCGCTGTGCTTGACTATCACTAGTTATCACAAGATTACCCCTGGCCAGTGCCCTGAAAAGTCCATGGAACAGGGAGTGATGGCTATTGGCCGCGGTT CCGAAAATGACTGGATACTGCCTGATCCCGAGCGCCTGGTTTCCACGCAACATTGCGTTATTCAGTACAAAGAAGGTCGTTATTATTTAACTGATAACAG CACTAATGGTGTTGAGTTAGTGCATGCCGGTATTCGTTTGCGCCGGGGAAACAGCGAGCCATTACACGACGGCGAACTGATCCGCATCGGTGATTACGAA ATCCAGGCGCGCATCGATTTCAACCTGAAAGTGACAGACAACCCGGCGTTTGCCGGCGACTCATCCAACAGCTTCGAAGCCCTGATGGGCGCCGCCGTGA AGGCCCCGACGCCGCAACCGGTCATCGCGCCGCAGTTCCAGGGCGCCTCGTCGATGGACACCCTGCCGGACCTGTTCGATTTCCTCGCGCCCACCAGCGT CCCGCCGGCCACCGTGCACGATCACGTACCGGCCGAACAACACGACTTCCGCCCACCGACGCCGCTGCCCGTGGCTGAGCCGCCGGCGCCTGTGGTCTCG GGCTCGGTGATTCCCGAAGACTGGGACCTGTTTGGCGATGCCCCGGCACCTAAGCCGGTTGCACCGCCGCCTCCACCGATCATCGAGCCCTCCAAGGTCG AGCAACCGCTCCCGGTGGCCGACGGCAACCCACCCGACTTACTGCAAGCCTTCCTGCGCGGCGCGGGCCTCGACGCATTGCGCCTGGACAAGGCCCAGGC TGAAGCCCAGATGGAAAGCATCGGCCGCAGCTACCGGCTGATGGTCGAAGGCCTGATTGACGTGTTGCGTGCTCGCGCGAGCCTCAAGGGCGAGTTCCGC ATGCAGCAGACGGTGATTCAACCGGTGGAAAACAACCCGTTGAAATTCGCCCCGAATGCCGATGAAGCGTTACTGCTGCTGCTACGCCACAGCAACCAGG CGTTTATGGCGCCGGACGTGGCCGTGCGCGACAGTTTCGACGATCTGCGTGCTCACCAACTGGCCGTCATGGCCGGGGTCGAAGCCGCCATCAAACACCT GCTGACACGCTTCGAACCGGCGCAGCTCGAAGAGCGCATGGGCAAGCCCGGCGGGCTGTCGAGCCTCTTCAACGGATCGCGCCAGGCCCAGTACTGGCAG CAGTTCACCGAGATCTACAGCAATATTTCCCGCGAAGCCCAGGAAGATTTCCAGGACCTGTTCGGGCGTGAATTCAGCCGTGCCTACGAAGAGCACAGCA CCCGACAGCGACGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACACCGCCGCATCGCAACAATGGAATAACGGATAGCTAAGTACGTCATTGAGGACGCAGGATGATTCCCAGGTTTTTACTCGCAGTCGCCACCGCGCT TCTGCTGACGGCGTGTGCCAAGGATGCAGCCAAACCCGAGGCCCCCGAGGCTGAGGCAGACACCGCCGCCGTCGAGCTGCATTTTCACGCCATCTCCGGG CTCAACCCCGGTTCCAATGGCCAGGCAGCCCCGGTGCGGGTGCGGATTTTCGAGCTGAAAAATGCCGCCACCTTCAGCCGTTCCGACTACTTCGCCCTGG CCGATCGCGCCCAGTCGACCCTCGGCCTCGACCTGCTCGACCAGGACGAGGTGGTGATCCAGCCCGGCCAGCAACTGAGCGTCCAGCGCGACCTCGACCC GTCCACGCGCCAGATCGGCCTGCTGGTGGGCTATCGCGAACTGGACCGCGCCGAGTGGCGCACCGTACTCAATGTGCCCGCGCGCCAGTACACCGAATAC
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| Amino Acid Sequence |
>type VI secretion protein
MSLCLTITSYHKITPGQCPEKSMEQGVMAIGRGSENDWILPDPERLVSTQHCVIQYKEGRYYLTDNSTNGVELVHAGIRLRRGNSEPLHDGELIRIGDYE IQARIDFNLKVTDNPAFAGDSSNSFEALMGAAVKAPTPQPVIAPQFQGASSMDTLPDLFDFLAPTSVPPATVHDHVPAEQHDFRPPTPLPVAEPPAPVVS GSVIPEDWDLFGDAPAPKPVAPPPPPIIEPSKVEQPLPVADGNPPDLLQAFLRGAGLDALRLDKAQAEAQMESIGRSYRLMVEGLIDVLRARASLKGEFR MQQTVIQPVENNPLKFAPNADEALLLLLRHSNQAFMAPDVAVRDSFDDLRAHQLAVMAGVEAAIKHLLTRFEPAQLEERMGKPGGLSSLFNGSRQAQYWQ QFTEIYSNISREAQEDFQDLFGREFSRAYEEHSTRQRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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