Pseudomonas sp. PAMC 25886, MUM_RS0103375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004489, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGATTGCTTGAGGACGTACTCCAGCTCACTGCTGCGATACGCCGGGTTGATATTGACCAGAATCACGCCGAGCTTGGCGCTGGCAATTTGGCTGATGCA CCACTCCGCGCAGTTGGGAGCCCAGATGCCCAGGCGGTCGCCGGTTTGCATGCCCATGGCCAGGAACGCACGCGCATGCAAATCAACCGTCTCTGCCAGT TGCCGCCAGGTGTAGCGACGCGGTTGATGGCGTACCACCAGCGCTTCGCCGTCAGGGTACTGCGCAACCGTGTTATCGAAGGCTTGGCCAATGGTCATGG CGAGCAAGGTCTTGTCCTGCCTGCCACGGCTGTAACTCTGATTCGTCTGATCCATAACGACCCCTGTTGTCTTTTTTGTAGGTTGACGTAAACGTAAACT ACGATTGACAGTCCTGCAACGCAAGCTTACGTTAACGTAAAGGTGATCGCCCTCCCCGGCGCATCGGCCACACAAAAACAACGTTAAAAGGTGCCCGTCC
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| DNA Sequence for Gene |
>MUM_RS0103375
ATGAGTTACCCCTCCCTGAACTTCGCCCTCGGTGAAACCATCGACATGCTGCGTGACCAGGTGCAGTCCTTCGTGGCCAAGGAACTGGCGCCGCGCGCTG CGCAGATCGACATCGACAACCTGTTCCCCGCCGACATGTGGCGCAAGTTCGGCGACATGGGCCTGCTGGGCATCACCGTGCCGGAAGAATACGGCGGCGC CGGCCTGGGCTACCTGGCCCACGTGGTGGCCATGGAAGAGATCAGCAGGGGTTCGGCGTCGGTGGCGTTGTCCTACGGCGCGCACTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCACCCACGAACAAAAACTCAAGTACCTGCCCAAGTTGATCAGCGGCGAACACATCGGCGCCCTGGCCATGAGCGAGCCGA ATGCTGGCTCCGACGTAGTTTCCATGAAGCTGCGCGCCGATAAACGCGGCAGTGTGTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCCGA CGCCAATACCTACGTGATCTACGCCAAGACCGACCTGGAAAAGGGAGCCCACGGCATCACCGCGTTTATCGTCGAGCGCGATTCGAAGGGCTTCAGCCGC AGCAACAAGTTCGACAAACTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAAGTGCCGGAAGAAAACATCCTCGGCGTGCTGA ATGGCGGCGTGAAGGTGCTGATGAGCGGCCTCGATTACGAACGCGTGGTGCTGTCCGGCGGCCCCACCGGGATCATGCAGGCCTGCATGGACCTGATCGT GCCCTACATCCACGACCGCAAACAGTTCGGCCAGAGCATCGGCGAGTTCCAGTTGATCCAGGGCAAGGTCGCCGACATGTACACCCAACTCAACGCCAGC CGTGCCTACCTGTATGCGGTGGCCCAGGCCTGCGAGCGCGGCGAAACCACGCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCCACCC AGATGGCCCTCGACGCGATCCAGATTCTCGGCGGCAATGGCTACATCAATGAATTCCCGGCGGGTCGTCTGCTGCGTGACGCCAAGCTGTATGAAATCGG TGCGGGTACCAGTGAGATCCGGCGCATGTTGATCGGTCGCGAACTGTTTAACGAAACCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGAGCGCGCCCCATGGCAACCCTGCACACCCAGCTCAACCCGCGCTCGACGGAATTCGCCGCCAACAGTGCGGCGATGCTCCAACAGGTCGACGCTCT GCACAGCCTGCTCGCCCAGGTGCAGCAAGGCGGCGGCGCCAAGGCCCAGGAACGCCATACGTCCCGGGGCAAGCTGTTGCCGCGCGAGCGGATCAATCGT TTGCTCGACCCGGGCTCGCCGTTTCTGGAACTCAGCCAACTGGCGGCGTATCAGGTGTATGGCGAAGACGTGCCCGCGGCCGGCGTGATTGCCGGGATCG GCCGTGTGGAGGGCGTCGAATGCATGATCGTCGCCAACGACGCCACGGTAAAAGGCGGCTCGTACTACCCGCTGACCGTCAAGAAACACCTGCGCGCCCA GACCATCGCCGAGCAGAACCGCCTGCCGTGCATCTACCTGGTGGACTCCGGCGGCGCCAACCTGCCGCGCCAGGATGAAGTGTTCCCGGACCGCGAGCAC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVAKELAPRAAQIDIDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGTHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGSVYVLNGSKTWITNGPDANTYVIYAKTDLEKGAHGITAFIVERDSKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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