Pseudomonas sp. PAMC 26793, D109_RS0129395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039330, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGATGCGCTCGGCCAGGCCTTCCCATTGGTAATGGGCCACCAGCGCGGTGAGAACCTGTTCCAGAGTGACGCCGTGCAGTGGGTCTTTGTTTGTCGCGG TCATGCCGGGCCTTTTGCGAAAAGAAGAAAACGAAGCCGCGCACCTTAGCGGACGGGCCGTGCCGGTGGAAGCGTTGCCTTCACTATAGGCCACTGTTCG ATCGTTCCCGCCCTCGTCGATCGTTCCCACGCTCTGCGTGGGAATGCCGAATTGGACGCTTTGCGTCCCGCGGTCGACGCAAATTTTAGCCCTGCGCAAG GGTGACGCAGAGCGTCACGGGATGCATTTCCACGCAGAGCGTGGGAACGATCAACGTGGGAGTGATGGAGCGGGGTTTGGGAAAGTTCCCCTTGGCAGGG AAAAAAGTGATGTTATATTGTAACAACAACTATCAAAGGGTATCGAATCCCTTACCGTTTTCAGCCTTCTCTTTTTTTGCCGTTTGCCAAGGAACGACCG
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| DNA Sequence for Gene |
>D109_RS0129395
ATGTCCCTCTCTTCTCTCTGGCGCCTCACCCCGCTGGCCGCCGCCCTGTTGATCACCTCCCAGGCCAACGCCCTGGAGCTGCAACCCCAAGTCATCACCG GCAACCCGCTGGGCAGCGAAACCCTCGCCTCGCCCACCACCGTGCTGGAAGGCGATGACCTGACCCTGCAACAAAAAGGCAGCCTGGGTGAAACCCTGAA CAAGCAGCCCGGCGTGTCGTCGTCGTACTTCGGCCCGGGGGCCAGCCGGCCGATCATTCGTGGCCAGGATGGCGACCGCATTCGCGTCCTGCGCAATGGT GTGGGCGCGCTGGATGCCTCGTCGCTGTCCTATGACCACGCCGTGCCGCTGGACCCGGTCAACGTCGACCGCATCGAGATCGTACGCGGCCCGGCCGCCC TGCTCTATGGCGGCAGTGCCATCGGCGGCGTGGTGAATACCTTCGACAACCGCATCCCCACCGAAGCCATCGAAGGCATCCATGGCGCCGGTGAATTGCG CTACGGCGGCGCCGACACCACCCGCAGCAGCGCCGGCAAACTGGAAGCCGGCAACGGCACCTTCGCCTTGCACCTGGACGCCAGTGCCCGGGAATTCAAC GACCTGAAAATCCCCGGCTTCGCCCGCAGCCGCCACGCGCCGGAAAGCGAAGACGGTGAAGGCAAGAACGGCCGCCTGGGCAACAGCAGCGGGCGCCAGG ATGGCGGCTCGGTCGGCGGTTCCTACACCTGGGACGACGGTTACGCCGGGCTGTCCTACAGCAACTACGAAAGCAACTACGGCTCCCCGGCCGAGCAGGA CGTGCGCATCCGCATGAAGCAGGATCACTACGCCTTTGCGTCCGAGATCCGCAACCTGCAAGGCCCGTTCACCTCGGTCAAACTCGACGCCGGCTACACC GACTACAAGCATATGGAGATTGAAGGCGGCGAGACCGGCACCACCTTCAAGAACAAGGGCTACGAAGCCCGGGTTGAAGCGCGGCACCTGCCGATCGGCC CCTTCAACGGCGTGGTGGGCGCTCAGGTCAGCCGCAACGAATTCTCCGCCCTGGGTGAAGAAGCCTTCGTGCCGCAGACCGACACCAACGCCGGCGCGCT GTTTATCCTCGAAGAAATGCAGGCCACCGAGCGCCTCAAGCTGAGCCTCGGTGGACGCCTGGAACACACCAACGTCGACCCCGACGGCAAAGGCAACGCG CGCTTCGCCAATGCCAACAAGTCTGCCGACTTCACCGCCGGCAGCCTGTCGTCTGGCGCGGTGTACACCCTCACGCCAATCTGGTCCCTGGCCGCCACCC TCGGCTACACCGAACGCGCCCCGACGTTCTACGAGCTGTATGCCAACGGCGCCCACGTCGCCACCGGTACCTACGAACTGGGCGACGCCAACCTGTCGAA AGAAAAGGCCGTGTCCAGCGACCTGGCACTGCGCTTCGACAACGGCACCCACAAGGGCAGCTTCGGCGTGTTCTACAGCCACTTCTCCAACTACATCGGC CTGCTGGGCAGCGGTCGCACCTTGAATGACGAAGGCGAGGAAGATGCCGGCGGCATTCCTGAGTACAAATACTCCGGCGTGCGTGCGCGTTTCGCAGGAT TTGAAGCCCAGGATCACATCAAGCTGGGGGAAGGTGCCTACGGCAAGTTCGCGTTGGAACTGTCCGGCGACTACACCCGCGCTACCAACATGGACACGGG TGAAGCGTTGCCACGGATTGCGCCGTTGCGTTTGAACAGCGGCCTGTTGTGGGAACTGGATCGCTGGCAGGCGCGGATTGACGTTGAACACGCGGCGGGC CAAGGCCGGGTGCCGGACAACGAAAGCGGCACCGATGGCTACACCACCCTGGGCGCCAGCGCTGGCTACCGCTTCAATGTGGGCGGCAGCCAGTGGCTGG CGTTCGTCAACGGCGAGAACCTGACGAACCAGACCATGCGCTATGCCAGCTCGATCCTGCGAGACATCGCCCCGGCGCCGGGGCGAAGTGTGCAGGTGGG CTTGCGCACCACCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGACTGCACTCGGTTAAAACTGTGGGAGCGGGCTTGCTCGCGAAAGCGCAGTGTCAGTCAATACAGGTGTGACTGACCCACCGTCTTCGCGAGCAAGCC CGCTCCCACCTTGACTATGCCCACTTCGAACAGGTTGTGGGGTTAGTACCGCGCATCCACGGGCTTCCCCCCCTTCGGCCAGTCCTTCACCTTGTCCGGG AAATCCGGACGAGGTTGTTGGGAGAAGTACGCCGCCACATCCACCGCCTCCTGATCCGACAAACCACCCTGCCCCAACGGGAATTTCTCGTGGAAGCCAA TCGGCATGTTGCGTTTCACGAACGCCGCCGCCGTGTACAGCCGCGCCATCCCCGCCCCGATATTGAACGATTGCTCGCCCCACAACGGCGGGTACACCCG TTCGCCATCCGCCCGCGTCAACCCCTGGCCATTGTCGCCATGGCACACCGCGCACTGCTTGACGTAGACCTGCTTGCCATTCTCCAGGTCCGGCTTGATC
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| Amino Acid Sequence |
>TonB-denpendent receptor
MSLSSLWRLTPLAAALLITSQANALELQPQVITGNPLGSETLASPTTVLEGDDLTLQQKGSLGETLNKQPGVSSSYFGPGASRPIIRGQDGDRIRVLRNG VGALDASSLSYDHAVPLDPVNVDRIEIVRGPAALLYGGSAIGGVVNTFDNRIPTEAIEGIHGAGELRYGGADTTRSSAGKLEAGNGTFALHLDASAREFN DLKIPGFARSRHAPESEDGEGKNGRLGNSSGRQDGGSVGGSYTWDDGYAGLSYSNYESNYGSPAEQDVRIRMKQDHYAFASEIRNLQGPFTSVKLDAGYT DYKHMEIEGGETGTTFKNKGYEARVEARHLPIGPFNGVVGAQVSRNEFSALGEEAFVPQTDTNAGALFILEEMQATERLKLSLGGRLEHTNVDPDGKGNA RFANANKSADFTAGSLSSGAVYTLTPIWSLAATLGYTERAPTFYELYANGAHVATGTYELGDANLSKEKAVSSDLALRFDNGTHKGSFGVFYSHFSNYIG LLGSGRTLNDEGEEDAGGIPEYKYSGVRARFAGFEAQDHIKLGEGAYGKFALELSGDYTRATNMDTGEALPRIAPLRLNSGLLWELDRWQARIDVEHAAG QGRVPDNESGTDGYTTLGASAGYRFNVGGSQWLAFVNGENLTNQTMRYASSILRDIAPAPGRSVQVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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