Pseudomonas sp. PAMC 26793, D109_RS0129320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039330, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCTGGATGGCGACCATGATGTATCAGGTCAACAAGCATGGCCTGACCAACACCAACAAGACGCGCCTGAGCTGCCTGAGCCTGTTCTGGCACTTCCTG GACGTGGTCTGGATCTGCGTCTTCACCGTTGTCTACCTGATGGGGACTCTGTAATGGCTAATGCACATTCCCATGACAGCCACGATGACAGCCACGGCAG CGTCAAGTCGTACGCCATTGGCTTCATCCTGTCGGTCATCCTGACGCTCATCCCGTTCGGCCTGGTGATGTACCCGACCTTGCCGAAGTCGATCACCTTG ATGATCGTCCTGGCGTTCGCGGTGATTCAGGTTCTGGTTCACCTGGTGTACTTCCTGCACCTGGACCGCTCGAAGGCTCAGCGCGATAACGTGATTGCGT TCGTGTTCGCAGGCTTGGTGATCCTCCTGCTGGTTGGCCTGTCGGTATGGATCATGTTCAGCATCCATACGTTCATGATGGCGAAGTGAGGTAAGACCCG
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| DNA Sequence for Gene |
>D109_RS0129320
ATGTCGCTTAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCTGTGGCAGGCGGTTTCTTCCTGGCCTCCAAGGGGCATG TCGATCTGGCCATTTTCCTGGCAGCGATGATCGGCACGTCCCTGGTGGTAGCTTCCGGTTGTGTATTCAACAACTGCATCGACCGCGATATCGACATCAA GATGGAACGCACCAAGAATCGTGTGCTGGTCCAGGGCCTTATCTCCCTGAAGCTGGCACTGATCTTCGCGACCGTTTTGGGTATCGCCGGCGTGGTGTTG TTGTACAAGGTGGCCAACCCGCTGGCGGCGCTGTTTGCCGTGATCGGCTTTGTCATCTACGTCGGCTTCTACAGCCTGTACCTCAAGCGCAAGTCGGTTC ACGGCACGCTGGTGGGCAGTCTGTCGGGGGCGATGCCGCCGGTGATTGGTTATGTGGCTGTGACCAATAGCTTCGACATGGCCGCGCTGGTGCTGCTGGT GATGTTCAGCCTGTGGCAGATGCCGCACTCCTATGCCATCGCGATCTTCCGCTTCAACGACTACCTGGCTGCCTCGATTCCGGTTCTGCCGGTCAAGCGT GGCATCAAGGTCGCCAAGAAACACATCCTGCTCTACATCCTGGCCTTCCTCGTGGCGACCTTGATGTTGACCTTCAGTGGCTACGCCGGCATGAGCTACC TCGCCGTTGCCGCCGCCATGGGCATGTACTGGTTGTACATGGCCTGGACCGGCTACAAGGCGGTGGATGACACCGTCTGGGCACGCAAGCTGTTCGTCTT CTCGATCTTCACCATCACCGCCTTGAGCGTGATGATGTCCCTGGATTTCCAGGTGCCGAAAGAGTTACTGCTGACGTACGCTCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGATCAAGCAGTAAAAAACCCCGCCTTCGAAAGAAGCGCGGGGTTTTTTATTGAGGGGCCTTTAAACTATGCCAAATCTTACAAATGCAGGAAGCAGCG TGATGAGTAAAAAAGCCGTTATCGTATTCAGTGGTGGGCAGGACTCGACAACCTGCCTGATCCAGGCACTGCCGCTGTATGACGAAGTGCACTGCATAAC CTTTGATTATGGCCAGCGTCATGTGGCGGAAATCGAAGTCGCACAGAAGCTCGCAAAACAGCTGGGTGCCACCGTTCACAAGGTGATGGACGTGTCCCTG TTGAACGAGCTGGCCATCAGCAGCCTGACCCGTGACAACATTCCGGTACCCACGGTGAACAGCTCAGGCGAGAGTTTGCCGAGCACCTTTGTGCCGGGCA GGAACATTCTGTTTTTGACCCTGGCGGCGATCTACGCCTATCAGGTCAAGGCGGAAACGGTGATCACCGGCGTGTGTGAAACCGACTTCTCCGGCTATCC
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSLKHFIQITKPGIIFGNVLSVAGGFFLASKGHVDLAIFLAAMIGTSLVVASGCVFNNCIDRDIDIKMERTKNRVLVQGLISLKLALIFATVLGIAGVVL LYKVANPLAALFAVIGFVIYVGFYSLYLKRKSVHGTLVGSLSGAMPPVIGYVAVTNSFDMAALVLLVMFSLWQMPHSYAIAIFRFNDYLAASIPVLPVKR GIKVAKKHILLYILAFLVATLMLTFSGYAGMSYLAVAAAMGMYWLYMAWTGYKAVDDTVWARKLFVFSIFTITALSVMMSLDFQVPKELLLTYAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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