Pseudomonas sp. PAMC 26793, D109_RS0127165 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039327, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACGCGGGGGCAAGGTCTATGCGCTGCTGCGGGAAACCCTGAAGAAAACCCGCAAGGTCGCCCTGGCCAACGTGGTGCTGCACACCAAGCAGCACCTGG CGGCGCTGATGCCGCTGGAGTCGGCACTGGTATTGGTAATGCTGCGCTGGCCCGCTGAAGTGCGCGGCCTGGATGAGCTGGAACTGGGCAGTGACGTGAC CAAACCGACCCTGGCCAAGGGCGAGTTGGACATGGCCAAGCGACTGGTGGAAGACATGAGCGCCGACTGGAAGCCCGAAGACTATCGCGACAGTTTCCAG GAAAAGATCATGGCGTTGGTGGCGAAGAAGGCCAAGGCCGGCAAGATCGAAGATGTGGAATCCAGCGAGGGTGAGGATGAGCGCAAATCAGCCGATGTGA TCGACCTGACAGAGCTGCTCAAACGCAGCCTGGCGGGCAAGGGCCCGGCGAAGAAACCGGCCGCGAAAAAAACCCGCAAGGCTTCATGAGGTAGACCGCC
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| DNA Sequence for Gene |
>D109_RS0127165
|ligD
ATGGCCAAGCCCCTGAGTGAATACAACGCCAAGCGCGACTTCGATGTGACCGCTGAACCTGCAGGCCGTACGCCTCGCGGCAGGAACCGCGCCCAGGCCC TAACCTTCGTGATTCAAAAGCACGATGCGCGCAACCTGCATTACGACTTTCGCCTGGAACTCGATGGCGTGCTCAAAAGCTGGGCGGTGCCCAAGGGCCC TAGCCTGGACCCGAGCCAGAAGCGCCTCGCCGTGCATGTGGAAGATCACCCAGTGGGTTACGGCAGTTTCGAGGGCAGCATCCCCGCCGGCCAGTACGGC GCGGGTGACGTGATTGTCTGGGATCGCGGCGTGTGGCAGCCCCACGACGACCCGGGCAAAGCCTACGCGGCCGGCAAGCTGAAATTCACCCTGATCGGCG AAAAGCTCGCCGGCGACTGGACGCTGGTGCGCACGCGACTCAAAGGCAGCGGCGACAAGGAGCAATGGCTGTTGATCAAGGAAAACGATCAACAGGCGCG CTCGTTGGCTGATTACGACGTGGTCCAGGCCGAGCCGAAAAGCGTGTTGAGCGATGCAACGGTGGGGCGCCCGAAAAAACCAGCTGCTGCGAAGAAAACC ACGCGCAAATCCTCAACTGCCCTGCCCGATCAGCTCACCCCACAATTGGCGACACTGGTAGACCGTGCACCGGACGGCGACTGGGTGTACGAGATCAAAT TCGACGGCTACCGGATCCTCACGCGTATTCGTGACGGTGAGGTACGGTTGTTCACTCGCAATGGTCATGACTGGACCGACCGGCTGCCGCGCCAGGTCAA GGCCCTGGAAGCGCTTAAGCTCAAGGACAGCTGGCTCGACGGCGAGGTGGTCAGCCTGAACGCGGATGGGTTACCGGACTTCCAGGCATTGCAGAATGCC TTTGATATCGGTCGCAGCCTGGACATCGTCTATTACCTGTTTGACGCGCCGTTTCTGGAAGGTCGTGACCAGCGCGAAACCGCCGTCGAAGAGCGCCGCA CCGCGCTGAAAAGCGTGCTGGCCCGCAGCAGGAGCAAGCTGCTGCGCTTCTCCGAGTCCTTCGCCGCCAATCAGCGGGATATTTTCGAAAGCGCCTGTGA CCTGGCGCTGGAGGGCGTGATCGGAAAACGTGCGGGCAGCCTGTACGTCTCCAAGCGCAGCCCGGACTGGATCAAGCTCAAGTGCCGACTGCGCCAGGAG TTCGTGATCGTCGGTTTCACTCGTCCGCAAGGTTCACGCAGTGGGTTTGGCGCACTGCTGCTGGCGGTCAATGACGACACCGGCCTGGTATATGCCGGGC GCGTGGGCACTGGATTTAATCAGGCCGCCTTGAAGAAAATCAGCGATCAGTTGAAAGCGCTGCAGCGCGATGCCTCACCGCTGGCCACACCGCTGACCAG CGCCCAGGCACGTGGGGTGCACTGGGTCGAACCTCAATTGGTGGGCGAAGTGCAATTTGCCGAATGGACCCGCGAAGGCGTGGTGCGCCAGGCGGCCTTT GTCGGGTTGCGCACCGACAAGCCGGCGGAGCAGATTGTTCATGAACAGCCGCGGGCGGCCAAATCGCTGAAGGAAAAACCCCGCAAAAAGGCAACCGAGA CCGGCACCGTGGCTGGGGTCAAGATCACTCATCCCGACCGGGTCATCGATCCCCAAAGCGTCACGCAGAAACTGCAACTGGCCCAGTTCTACGAGGGCAT CAGTGAATGGATCCTGCCCTTCTTGCGCAACCGTCCTGTGTCTTTGCTCAGGGCACCGGAAGGCATTGCCGGCGAACAGTTTTTCCAGAAGCACTCCGAG CACTTGGCGATCCCGAATATCAAACATCTGGACCAGGCCCTGGATCCGGGTCATGCGCGGCTGATGGAAATCGACAGCCCCGCCGCGCTGATCGGTGCGG TGCAAATGGGCACCGTCGAGTTGCACACTTGGGGCGCCACCGCGGACAAAATCGAAACCCCGGACCTGTTTGTGCTCGACCTTGACCCGGACCCGGCGCT GCCTTGGAAAAGCATGCTCGAAGCGGCGCAGTTGACCCTGTCTGTGCTGGATGAGTTGGGGCTTGAAGCGTTCATCAAGACCAGCGGTGGCAAAGGCCTG CACCTGGTGGTGCCGCTGGCGCGCAGGGACGGCTGGGACACGATAAAAGCGTTCGCCAAGGCGATCGCCCAGTTCATGACGCAGCAGTTGCCAGAGCGTT TTACCGCAACCTCGGGCCCGAAAAACCGCGTTGGCAAAATCTTTATCGACTACCTGCGCAACGCCCGGGGCGCCAGTACGGTGGCGGCCTACTCAGTGCG CGCGCGACCCGGCCTGCCGGTGTCGGTGCCGGTGAGTCGTGACGAGTTGAAGGGTTTGCACGGCGCCCAGCAATGGACCGTGGCCAACCTGCACGAGCGG TTGCAGGAGTTGAAGAAGGACCCGTGGGCGGGTTATGCCAATCGGCAGAAGATCAGCAAGAAGATGTGGGAGAAGCTGGGCGCGCATCCGCCAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCGCTCCCCTGCCAGGTTCAGATCAGGATGAAGATCAGCGCCAAACCGGCGAAGATCGCCCACTTCTCCAGGTAGTAGCGGGTGCGATTGCGCTTTTTC AGCTCCTTGCCCCGCAGACGGATCTTGTACAGGCGAGTAAAGGCACGGTTCAAGCCACCGGTCTTGTCCCCGGCATCGTTGGGCGAGCCGGCCGCAGCCA TGACGTTGCGGCTGAACCAACGGTTGAACGCCGCCGCCCAGCGATACTTCATCGGGCGTTCGATATCGCAGAACAGAATGATCCGGTTCTGCTCCGTAGT GTTTTCGGCGTAGTGGATGAAAGTCTCGTCAAACATCACCGGTTCGCCGTCGCGCCAATAGTAGTTTTCACCGTCCACGTTGATGTAGCAGCCCGGGGAG TTCGGCGTGTCCAGCCCCAGGTGGTAACGGTAGGAACCGGCGTACGGGTCACGGTGGCGTACTAGCTTGGAGCCCGGTGGCAATTCGGCAAACATCGCGG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPLSEYNAKRDFDVTAEPAGRTPRGRNRAQALTFVIQKHDARNLHYDFRLELDGVLKSWAVPKGPSLDPSQKRLAVHVEDHPVGYGSFEGSIPAGQYG AGDVIVWDRGVWQPHDDPGKAYAAGKLKFTLIGEKLAGDWTLVRTRLKGSGDKEQWLLIKENDQQARSLADYDVVQAEPKSVLSDATVGRPKKPAAAKKT TRKSSTALPDQLTPQLATLVDRAPDGDWVYEIKFDGYRILTRIRDGEVRLFTRNGHDWTDRLPRQVKALEALKLKDSWLDGEVVSLNADGLPDFQALQNA FDIGRSLDIVYYLFDAPFLEGRDQRETAVEERRTALKSVLARSRSKLLRFSESFAANQRDIFESACDLALEGVIGKRAGSLYVSKRSPDWIKLKCRLRQE FVIVGFTRPQGSRSGFGALLLAVNDDTGLVYAGRVGTGFNQAALKKISDQLKALQRDASPLATPLTSAQARGVHWVEPQLVGEVQFAEWTREGVVRQAAF VGLRTDKPAEQIVHEQPRAAKSLKEKPRKKATETGTVAGVKITHPDRVIDPQSVTQKLQLAQFYEGISEWILPFLRNRPVSLLRAPEGIAGEQFFQKHSE HLAIPNIKHLDQALDPGHARLMEIDSPAALIGAVQMGTVELHTWGATADKIETPDLFVLDLDPDPALPWKSMLEAAQLTLSVLDELGLEAFIKTSGGKGL HLVVPLARRDGWDTIKAFAKAIAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSRDELKGLHGAQQWTVANLHER LQELKKDPWAGYANRQKISKKMWEKLGAHPPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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