Pseudomonas sp. PAMC 26793, D109_RS0125215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039321, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGAAAAAGCCGGCGAAAACGCGGCCAAGGTCAAGCTGACCCTGGAAGACGGCAGCGCCTACAAGCTGGACGGCAAGCTGGAGTTCTCCGAAGTCTCGGT CGACCAGACCACCGGTTCCGTGACCCTGCGTGCCGTGTTCCCGAACCCGGATCACACCCTTCTGCCAGGCATGTTCGTACACGCCCAGCTGCAAGCCGGC GTGAACAGCAAGGCCATCCTGGCTCCGCAACAAGGCGTCACTCGTGACCTCAAGGGTGTACCGACGGCACTGATCGTGAACAAGGACAACAAGGTCGAGC AACGTGTCCTAGTGGCCAACCGCACTTCCGGCGCCTACTGGCTGGTGGAAAAAGGCCTGGACGCTGGTGACCGCGTGATCACCGAAGGCTTGCAATTCAT CAAGCCGGGCATCGAAGTCAAGGTCAAGGACGCTGACAACGCTAAACCCGCCGGCACTGCTGCAGCGCCTGCTGCCGATGCTGGTAAAGGGGAGTAATCC
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| DNA Sequence for Gene |
>D109_RS0125215
ATGTCGAAATTTTTTATCGACCGTCCCATTTTCGCCTGGGTAATTGCCCTGGTGATCATGCTGGTCGGGGCACTGTCGATCCTGAAGTTGCCCATCAACC AGTACCCGGCCATTGCGCCAACCGCCATTGATATTCAGGTGACCTACCCGGGCGCGTCCGCACAAACCGTGCAGGACACCGTGGTGCAGGTTATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTTTCCTCGGACAGTAACTCCGACGGCAGCATGACCATCACCGTGACGTTCAACCAGGGTACCAACCCG GATATCGCCCAGGTTCAGGTGCAGAACAAGTTGAACCTGGCGACCCCACTGCTGCCGCAAGAAGTGCAGCAGCAGGGTATCCGCGTAACCAAGTCGGTGA AGAACTTCCTGATGGTGATCGGTCTGGTGTCCGAAGACGGCAGCATGACCAAGGACGACCTGTCCAACTACATCGTATCCAACATCCAGGACCCGATTTC GCGGACCGCCGGTGTAGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTCGACCCGGCCAAGCTGAACAACTACCAGCTCACGCCG GTGGATGTCAGCACAGCGATCTCCGCACAGAACGTGCAAGTGGCTACCGGCCAACTCGGCGGCCTGCCTGCCGTGCCCGGCACCCAGTTGAACGCAACCA TCATCGGCAAGACCCGCCTGCAGTCTGCAGAGCAGTTCGGCAATATCCTGATGAAGGTCAATACCGACGGCTCACAGGTACGCCTGAAGGATGTTGCCCG TATCGAGTTGGGCGGTCAGAACTACAGCATCGCTGCACAGTTCAACGGCAAGCCGGCATCCGGTATGGCGATCAAGCTGGCGGCCGGTGCTAACGCGCTG GACACCGGCAAGGCCATCCGCGCCACTGTAGCGTCCCTGGAGCCGTTCTTCCCGCCAGGCATGAAAGCTGTGGTGCCGTATGACACCACCCCAGTGGTGA CCGAATCGATCTCCGGTGTGGTTGACACCTTGGTCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAAAACTTCCGCGCCACCATCAT CACCACCATGACCGTGCCGGTAGTGTTGCTGGGTACCTTCGGGATCCTGGCTGCGTTCGGCTTCACCATCAACACCCTGACCATGTTCGGCATGATCCTG GCCATCGGCTTGCTGGTGGACGATGCCATCGTTGTGGTGGAAAACGTCGAACGAGTCATGGCCGAGGAGCACTTGTCGCCTAAAGAGGCGACGGTCAAGT CCATGGGCCAGATCCAGGGCGCCCTGGTAGGTATCGCGCTGGTGCTGTCGGCAGTACTGCTGCCGATGGCATTCTTCGGCGGCTCCACCGGTGTGATCTA CAAGCAGTTCTCCATCACCATTGTTTCGGCGATGGCGTTGTCGGTACTGGTTGCGCTGATTTTCACCCCGGCCTTGTGCGCCACCATGCTCAAGCCGATC GACCCGGAAAAACACGGCCAACCCAAGCGCGGTTTCTTCGGCTGGTTCAACCGTACCTTCGACCGCGGCGTATTGAGCTACGAACGCGGCGTCGGCAACA TGATCAAGCACAAGATCCCGGCGTTCCTGGTCTACGCGCTGATCCTGGCCGGCATGATCTGGCTGTTCATGCGCATCCCTGCCGCCTTCCTGCCCGATGA AGACCAGGGCGTGATCTTCGCTCAGGTACAGACGCCGGTCGGTTCTTCGGCGGAGCGCACGCAGACAGTCATCGACGATATGCGTGCCTACCTGCTGAAC GACAAGGAAGGCGAGCCGGGCGAAGGCAAAGGCGTAAAATCGGTATTTACCGTAAACGGCTTCAACTTCGCCGGTCGTGGTCAGAGCTCTGGCCTGGCCT TCGTGATGCTCAAGTCATGGGAGGAGCGCGACGCATCCAACTCGGTATTCGAGATTGCCAAGCGCGCCCAAGGTTACTTCTCCCAGACGTTCAAGGACGC CATGGTATATGCCATTGTGCCGCCTTCGGTTCTGGAGTTGGGTAACGCCACCGGTTTCGACGTATTCCTGCAAGACCAGGGCGGCGTCGGTCACGACAAG CTGATGGCTGCACGCAACCAGTTCCTTGGCGCAGCGGCACAAAGCAAGATCCTGGCAGGTGTGCGCCCCAACGGCGTGAACGATGAACCGCAATACGAGC TCAGCGTCGACGACGAGAAGGCAAGTGCCTTGGGCATCAGCCTGGCAGACATCCAGCAGACCTTGGCCATCGCCCTGGGTGGCAGCTACGTCAACGACTT CATCGACCGTGGTCGTGTGAAGAAAGTGTATGTGCAGGGCGACGCTTTCAGCCGGATGTCCCCGGAAGACCTGGACAAATGGTACGTGCGCAGCACCTCC GGGAAGATGGTGCCAATGTCGGCCATCTCGTCGGGCAAGTGGATCTACGGTTCGCCGAAACTCTCGCGCTACAACGGTGTAGCCGCGATGGAAATCCTCG GTACTCCGGCACCTGGCTACAGTACCGGTGACGCGATGACAGAAGTCGAGCGCATTGCCAAGGACCTGCCGGCGGGTGTCGGTTATGCGTGGACCGGCCT GTCGTACGAAGAACGTCTGTCCGGCTCCCAGGCACCTGCGCTGTACGCCCTGTCGCTGCTGGTAGTGTTCCTCTGCCTTGCGGCACTGTACGAAAGCTGG TCGATCCCGATTGCGGTGATTCTGGTGGTACCGCTGGGTGTGATCGGTGCGTTGATGGCCACCAGCCTGCGGGGACTGTCCAACGACGTGTTCTTCCAGG TAGGCCTGTTGGTGACGGTGGGCCTGGCAGCGAAAAACGCCATCCTGATCGTGGAGTTCGCCAAAGAGCTCCACGAACAGGGCAAAGGCATCGTCGAGTC GGCCATCGAGGCATCTCGCATGCGTCTGCGACCGATCATCATGACGTCCATGGCGTTCATGCTCGGCGTACTGCCCCTGGCGATTTCCACCGGTGCAGGC TCAGGTAGCCAGCACGCCATCGGTACGGGCGTAATTGGCGGTATGATCACCGCCACGGTCCTCGCGATCTTCTGGGTACCCCTGTTCTTCGCAACCGTGT CCTCCGCTGGCGAGCGTAAAAAGACTGAAACCAAGCAAACTCCTAAAGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGTCGCTACTTTCCTTAGCGGTCACAGCATTCGTGCTCAGTGGCTGCTCGCTGATCCCGGACTACCAGCGCCCTGAAGCGCCGGTAGCCGCGCAGTT CCCGCAGGGGCCGGCGTATTCGTCGGCCCAGGCGCCTGGCCAGGCCGCTGCCGAGCAAGGCTGGAAGCAGTTTTTCCATGACCCTGCCCTGCAACAGCTG ATCCAGACTGCACTGGTGAACAACCGCGACCTGCGTGTCGCGGCCCTGAACATCGACGCGTATGCCGCGCAGTACCAGATCCAGCGTGCCGACCTGTTCC CGGCAATCTCGGCCACGGGCAGCGGCAGCCGCTCGCGTACCCCGGCCAAGCTGTCCCAGACCGGCGAATCGACCATCTCCAGCCAGTATTCGGCTGGCCT GGGGATCAGCTCCTATGAGCTGGACCTGTTCGGCCGCGTCCGCAGCCTGAGCGAACAAGCGCTGCAACAATACTTCGCCACTGAAGAAGCGCGTCGCACC
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| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNP DIAQVQVQNKLNLATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFGSQYAMRIWLDPAKLNNYQLTP VDVSTAISAQNVQVATGQLGGLPAVPGTQLNATIIGKTRLQSAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLAAGANAL DTGKAIRATVASLEPFFPPGMKAVVPYDTTPVVTESISGVVDTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMIL AIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPI DPEKHGQPKRGFFGWFNRTFDRGVLSYERGVGNMIKHKIPAFLVYALILAGMIWLFMRIPAAFLPDEDQGVIFAQVQTPVGSSAERTQTVIDDMRAYLLN DKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKSWEERDASNSVFEIAKRAQGYFSQTFKDAMVYAIVPPSVLELGNATGFDVFLQDQGGVGHDK LMAARNQFLGAAAQSKILAGVRPNGVNDEPQYELSVDDEKASALGISLADIQQTLAIALGGSYVNDFIDRGRVKKVYVQGDAFSRMSPEDLDKWYVRSTS GKMVPMSAISSGKWIYGSPKLSRYNGVAAMEILGTPAPGYSTGDAMTEVERIAKDLPAGVGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESW SIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKGIVESAIEASRMRLRPIIMTSMAFMLGVLPLAISTGAG SGSQHAIGTGVIGGMITATVLAIFWVPLFFATVSSAGERKKTETKQTPKEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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