Pseudomonas sp. PAMC 26793, D109_RS0125080

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PAMC 26793 ctg7180000039321, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGAGGCGTTTGCGGCAGGGGCGAAGGGATGGTGCACGGCGGCGCCGAACCTGATTGCGCAGCTCAACCTGGATTTGTATGAAGCCGTTTTGGCCAATGAC CTGGAGAAAGCCCGGGAACTGTTTTATCGCCAGTTGCCGTTGCTGGACTTCATCCTCAAAGGCGGCTTGCCGGCGACGATCAAGGCCGGTTTGCAGCTGA CGGGGCTGGAGTCGGGGGATCCACGGTTGCCGGTGTTCCCGCTGGGTGAGCCTGGCCGTGTTCAGTTGCAAGCACTGCTGACCCTGTTGCGCTGAAACGC CATCCAAAGGTGGGAGCGGGCTTGCTCGCGAAGGCGGTGGGTCAGTCAATTAATATGTCGACTGATTCACCGCCTTCGCGAGCAAGCCGCTCCCACATTC AGTCCGCATTCCTCCGTAGAATTTCACTAGAGACAAATGATAATAGTTCTCGATATCATTCGCGACTTTTCCACGTCGTGCTTCGTCAAGAAGGATATCC
DNA Sequence for Gene
>D109_RS0125080
ATGTCTCGTCCCAAGCCCGACCCGCTGTCGGCCGATGCTTTTCGCAGGTTTTATGCAGATATCCTGCATTTCCTGCGCAAACGCACGGACAACGCCAGCG ACGCGGCAGACATGACCCAGGACGTCTTCACCCAGTGGCTGGACTACCGCGACCGCGCCCAGGTCGAGCAGCCACGGGCGTTTCTGTTCCAGATGGCGCG CAATCTGCTGCGCGATCACTGGCGCAAACAAAAGGTGCGGCACACCGTCCACCAGCAACAGGCCGAACTGGATGCCGAACCTGTCAGCGACTCGCGAGAC GATCCCATGGCCGCCGCGCAACGCCTGCAACGCCTGGAACAGTTGAAAGAAGTCCTCTCTGAACTCTCGCCGAGAAGACGAGAAGCCCTTATGCTGCACC GCTTCGAAGGCCTGAGCCAGGCGCAGATCGCCGAACGCATGGGCGTTTCCGTCAGCATGGTGGAAAAGCACATCGCTTTTGCCTTGCTGCATTGCAAGCA GCGACTTCAACAAGAACAGGGCAAGGAGCAGCCAGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCGCCTGAGCGACATCGACAGCTGTGACATCGAGGCCCGCGACTCCATCGATGCCCAAGCCGCCAGCTGGTTTGCGCGCAACCGCAATGACGCCGGTCG CGCCGACCGCAAGGCGTTTGCCGCCTGGCAGTCCGAGCCGGCGCATGCCCGTGCCTACGCCGAATTCGAACAGCTGTGGGCCGACCTCGCCCAGTTGCAG CAACTGAACAAACCCACACCGCTGCCCGTGCGCAAAACGTTAGTCTGGCGCCCGGCCCTGGCGGTGGCGGCCGCCTTGGTGTGTGCCCTGCTGACGAGCA ATCTCGACGCCCCGCGCGAGCTGTTCCACGCCCAGGTCGCGGCCCATGCCAAGGGCATGCGCACCTTGCACTTGCCCGACGGCAGCACCTTGTACGTCAA TGCCAACACGCGCCTACGGCTGGATTTCAACAGTCATCAGCGCGTCGTGCATCTGGATCAAGGGCAACTGTATATCGAGGTGGCACCCGACAAGGAACGG
Amino Acid Sequence
>RNA polymerase sigma factor
MSRPKPDPLSADAFRRFYADILHFLRKRTDNASDAADMTQDVFTQWLDYRDRAQVEQPRAFLFQMARNLLRDHWRKQKVRHTVHQQQAELDAEPVSDSRD DPMAAAQRLQRLEQLKEVLSELSPRRREALMLHRFEGLSQAQIAERMGVSVSMVEKHIAFALLHCKQRLQQEQGKEQPE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site