Pseudomonas sp. PAMC 26793, D109_RS0123070
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039318, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTAGACCGTCCCTTACGCTCACCTTGCTCCAGGCCCGCGAAGCGACCATGGCGTTCTTCCGGCCACTGCTCAATGAACATGACCTGACCGAACAGCAATG GCGGGTGATCCGCATCCTGCGTCAGCAGGGCGAACTCGAAAGTCACCAACTGGCGCACCTCGCGTGCATCCTCAAGCCGAGCATGACCGGCGTACTGGGC CGGCTGGAGCGTGACGGCATCGTGCGCCGGCGCAAATCCGCCGAAGACCAGCGCCGGGTGTTCGTCGCCCTGACCGAACAGGGCCAGCAGTGTTTCGTCG ACATGAGCGCCGGGATGGAAAGCAACTACCAGAAGATTCAGGAGCAGTTCGGCGAGGAATCCCTGGAGCAATTGATGGAGTTGCTCCAAAAGCTCAAAGG CATCAAACCGTAATATTCAAAAAAATTGGCTGAAGCCTGTCCCTTTTTTTCACGTGACTGGTCATTCCAGGTAAGTGAACAAAATCGAGAGCTTCTGCCA
|
|
| DNA Sequence for Gene |
>D109_RS0123070
ATGCCCGCAATCCGTCCGCTGCTGAATTTCAGCCTCATGCTGAGCCTGAGTGCCAGCCCGTTGTTCGTCCCCATCAGTTATGCCGAAGACGGCGCGTCTC GGCGCAGCTACCAGGTGCCGGCCGGCAGCCTGAGCGCCGCGCTGACCCGTTTCGCCGGCCTGGCCGGGGTCAACCTCTCGGTAGACCCGGCGCTGGTCAG CGGCCGCAACAGCAGCGGGTTGTCCGGCGAATACGGCGTCGAAGAAGGGTTTGCCCGCTTGCTGCAAGGCTCAGGCCTGCAACTGCAACCCATGGGCGAG CAGGCCTACATGCTGACCCCAATTCCGGAAGGCGGCAGCCTGCAACTGGCGCCCACCTCGATTCTTGGCACCGTCGGCGATGCCGGCAGCGAGTCCTTTG CCGGTGGCCAGGTGGCGCGCCGTGGCTCCCAGGGCCTGCTGGGCTCGCGGGACTTCATGGACACCCCGTTCAGCATGACCACCTACACCAGCGCGGCGGT CAAGAACCAGCAGGCGCGCACCCTCGGCGACCTGATCGCCAGCGACCCCTCGGTGCGCGCCACCAACCCGGCGGGCGGGCGCTATGAGCAATTCACCATT CGCGGCTTCAGCCTGTTCAATAGCGATGTCGCCTACAACGGCCTCTACGGCGTGCTGCCGACCTACACCATCGACATGGAAATGGCTGAGCGCGTCGACA TCATCAAAGGCCCCAGCCAGTTGATCAACGGCATCTCGCCGCGGGGCAGCGTCGGTGGCGGGATCAACGTGGTGCCCAAGCGCGCTACCGACACACCCAT CACCTCGTTTACCGGCAGTTGGGCCTCCGACAGCCAGGCGGGCGGGGCCGTGGACATAGGCCGGCGTTTTGGTGAAGACAATCAATTCGGCCTGCGTTTC AACGGCGTGAAGCAGTCCGGCGACACCGCCTGGGACGACCAGAGTGTCGACCGCGAAATGGCCGTGCTGGGTCTGGATTTTCGCGGTGAACGCCTGCGCC TCTCCACCGACATCGGCCGCACCGAGCGCGACACCAACGCCCCGCAAGAGCGTGTGCAAGTTGGACCCAACGCCAAGGTGCCGAGTGCCAACGACGTGCG TCACAACTACGCGCAGCCCTGGAGCAAGGCGAGCACCAATGACACCTTTGGCACGGTCAACGGCGAGTTCGACCTCAGCGACAACGTGATGCTCTATGGC GGCGTCGGCGCGCGCAAAAGCAACCACGACTTCCTGCGCCACGCGGTGTCGGTGACCAACAACGCCGGTGACTTCAGCGTGCAGCCCCGCGACTTCACCC GCGACGAAAACGTGCGCACCGCCACGGCGGGCGTGCGCAACTGGTTCCACACCGGCCCGGTGAGCCATGAGGTCAACCTGGCGGCCAGCTACTTCTACAT GGACTTCGAAAACGGCGGCGCGCGCTATGCCGCAGCCCCGAGCAATCTCTACAACCCGGTGGAAACACCTACGCCAAGCCGGCCAACGCGATTTGACTCG AAGGTCTACACCGAAAACCGATTCAGCGGCGTGGCGTTGTCCGACACCCTGGGCTTCTTCGATGACCGGCTGCTGCTGACCCTCGGCGCGCGCTGGCAGC GGGTCAAGGTGGACGATTGGACCGACAACGTCAAAGGCGACACCGCCTACGACGAAGAAAAGATTTCACCGTCGGGCGGCATCCTGTTCAAGGCCACCGA CCAGCTCTCGCTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGGTCGCGCCGTCGACCTCGATCAACGAGGATGAAATCTTCCCGCCCTTCATC AGCCGCCAGGTTGAAGTCGGTGCCAAGTACGACGCGGGGGCGTTCGCGGTCACCGCTGCGGTGTTCCGGATCAAGCAGCCAGCCTACGAGACCAACGCCA CCACGCGGGTCTTCGGCCCCAACGGCAAGCGCCAGAACGACGGCGTCGAACTCAGCGTGTTCGGCGAACCGCTCAAGGGCTTCCGCCTGCTGGGCGGGGT GATGTACATCGACAGCGAATTGACCCACACCACCAACGGAACCTACGACGGCAACCGCGCGCCGGCCACGCCCAAGTACAACGTCAACCTCGGCGCCGAG TGGGATGTGCCCACCGTTGAAGGCCTGACCCTGACCAGCCGCGGGATCTATTCCAGCTCGCAGTACCTGGACCAGTCCAACGTCAAGGAAATCGACGCCT GGACCCGTCTTGATGTGGGCGCACGCTACGCCTTCAAGGTCGATGACAAGCACATCACCCTGCGGGCCAACGTCGAGAACGTGGCCGACCGGCGCTACTG GAGTTCGGCCGGCGCGTCGGATGACAGCGAGCCGGGGTTGACCCTGTCGACGCCGCGCACTTACTTGCTGTCGGCCACCGTCGACTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGCCTGCCATATAGCCTTCTGTACATCGATGGGCTTGGGCAGCAGGCGGTTCTGGTAAAACAGGTCCGCCGTCTCTTGCTGCGCCCCAATGATGTGCG CATCAATCGGCAGGATCGGCGATGGCGGCCGGTTATCGACATAACGTGCAATCACCCCGGCCGGCAAACCCATGAAACGGGTCAGCACCTGCAGGCTGTC TTCGCGCTGGCTGCGGGTCAGGGCTTCGGCGGCGCTGAGTTCGTCGAGCAGGGCGTGGATGAACGCACCGTTGGCCTGGGCGTAATCACGGCGCGCGGTA TAGATCGGCCCAGACAGGTTCAAGCCTTCGCCGTTGGCCAGGATTCGGCTGGGGCTTTGGCTCAGGGCCAGCGACGAGTAGGGCTCCCAGATCGCCCAGG CATCGACACTGCCTTGCTCGAAGGCGGCGCGGGCATCGGCCGGTGGCAGGTAAACCGGCTGGATATCCTTGTAGCTCAGGCCGGCTTTGTTCAAGGCCCG
|
|
| Amino Acid Sequence |
>TonB-denpendent receptor
MPAIRPLLNFSLMLSLSASPLFVPISYAEDGASRRSYQVPAGSLSAALTRFAGLAGVNLSVDPALVSGRNSSGLSGEYGVEEGFARLLQGSGLQLQPMGE QAYMLTPIPEGGSLQLAPTSILGTVGDAGSESFAGGQVARRGSQGLLGSRDFMDTPFSMTTYTSAAVKNQQARTLGDLIASDPSVRATNPAGGRYEQFTI RGFSLFNSDVAYNGLYGVLPTYTIDMEMAERVDIIKGPSQLINGISPRGSVGGGINVVPKRATDTPITSFTGSWASDSQAGGAVDIGRRFGEDNQFGLRF NGVKQSGDTAWDDQSVDREMAVLGLDFRGERLRLSTDIGRTERDTNAPQERVQVGPNAKVPSANDVRHNYAQPWSKASTNDTFGTVNGEFDLSDNVMLYG GVGARKSNHDFLRHAVSVTNNAGDFSVQPRDFTRDENVRTATAGVRNWFHTGPVSHEVNLAASYFYMDFENGGARYAAAPSNLYNPVETPTPSRPTRFDS KVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWTDNVKGDTAYDEEKISPSGGILFKATDQLSLYANYMEGLSQGKVAPSTSINEDEIFPPFI SRQVEVGAKYDAGAFAVTAAVFRIKQPAYETNATTRVFGPNGKRQNDGVELSVFGEPLKGFRLLGGVMYIDSELTHTTNGTYDGNRAPATPKYNVNLGAE WDVPTVEGLTLTSRGIYSSSQYLDQSNVKEIDAWTRLDVGARYAFKVDDKHITLRANVENVADRRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|