Pseudomonas sp. PAMC 26793, D109_RS0120915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039315, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGTTGGTCAGTTCGCCGTTGGCTTGCAGGGTGCTAAGCAGTTGGCTTTGCGGGAACTGGCGCATTTTGAGTACATAGTCGACCACCGGGCCGTCGCC ACCCAATTGCGGTGCTTCGGCGCTGCCGGTGATTGGCAACACTTCAAGATACAAATCATCGGTCAGGCGCTGGTTGAGGCGCAGTTCCTCATTGCAGAAA TGGCCGCGGGCTTCCAGGGTGGTGAAATCGAGGAAGCCGAAATTCACCGGCTTCTTCATTTTATAAGCATAGGGCCCGGTGAGCAGGACCCAGGAAATAT GGGTCTCGATGACTTGGAACTGATCCACCGGATGGGGAAACAGGGCCGGGTTTTGCAGGGCTGCAATCAGGGACTGGCTCACGGGCGATCCTTCAGAGTC TGGGAAAATTCATGGCGGGCATTATGGCTGCTACAGACGGTCGTGCAAACCGCTGTCCGGCTCATGTTGGTCATCAATAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>D109_RS0120915
ATGACTCGTACCCGATCTCCCCGTTCCCGTAAAAAACCTCCTTCCCGCGGCCTGCGCCCTTGGCTGGGCTGGGCGCTTAAGCTCGGCCTGGTAGGGCTTG TCGTGATCGCCGGCTTCGCGGTTTACCTCGATGCCGTGGTCCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATTCCGGCCAAGGTATACGCGCGCCCGCT GGAACTGTTCACTGGCCAGAAGCTGAGTAAGGAAGACTTCCTCACCGAACTCGATGCCCTGGGCTATCGCCGCGAACCCGTGAGCAACGGCCCCGGCGCG GCTGCCGTCAGCGGTAACACCGTCGACTTGAACACCCGCGGCTTCCAGTTCTATGAAGGCCTGGAAAAACCCCAGCCGGTACGCGTGCGTTTCTCTGGCG ACTACGTAGCTGAGCTGTCCTCGCTCAACGGCTCGAAGTTGCCGGTGGTGCGCCTGGAACCCTTAATGATCGGTGGGATTTATCCGAAAAACCTGGAAGA CCGCATCCTGATCAAGATCGATCAGGTGCCGCCTTACCTGCTGGATACCCTGATCGCGGTGGAAGACCGGGATTTCTACAGCCACTGGGGCGTATCGCCC AAGTCCATCGCGCGTGCCATCTGGGTCAACACCTCCGGCGGCAAGATGACCCAGGGCGGCAGTACGCTGACGCAACAATTGGTCAAGAACTTCTACCTGA CCAACGAACGCAGCCTGACCCGAAAGCTGACCGAAGCCATGATGGCGATGCTGCTGGAGCTGCATTACAGCAAGCAGGAAATTCTTGAGGCGTACCTCAA TGAAGTGTTCGTTGGCCAGGACGGTCAGCGTGCGGTGCACGGTTTTGGTCTGGCCAGCCAGTTCTTCTTCGGCCAGCCGTTGTCCGAGTTGAAACTGCAT CAAGTGGCGCTGCTGGTGGGCATGGTCAAGGGGCCGTCCTACTACAACCCGCGTCGCAACCCGGAGCGGGCGCTGGAGCGGCGTAACCTGGTGCTCGACG TACTTGAGCAGCAAGGTGTCGCCACTCCGGAGCAAGTCGCTGCCGCGAAGAAAATGCCACTGGGTGTGACTACTCGCGGCAAGCTGGCCGACAGTTCCTT CCCGGGCTTCATCGACCTGGTCAAACGCCAACTGCGTGAAGACTACCGCGACGAAGACTTGACCGAAGAAGGCCTGCGGATCTTCACCAGTTTCGACCCG ATCCTGCAGATGAAGGCCGAAGCCTCGGTCAACGATACCTTCAAACGCCTGGCAGGCCGTAAAGGCTCCGACGACGTCGAGGCCGCGATGGTGGTGACCA ACCCGGAAACCGGTGAAGTCCAGGCCATGATCGGCAGTCGCCAGGCCAGCTTTGCCGGGTTCAACCGGGCGCTGGACGCGGTGCGGCCGATTGGCTCGCT GGTTAAGCCGGCGGTGTACCTGACGGCGTTGGAAAAACCGAGCAAGTACACGCTGACCAGTTGGCTGTCCGATGACCCGTTGTCGGTCAAAGGGGCTGAT GGCCAGATGTGGACGCCGCATAACTTTGATCGTCGCTCCCACGGTACGATTTTCCTGTACCAGGGCTTGGCGCATTCCTACAACATCTCGACCTCCCGCC TTGGTCTCGAGCTTGGCGTGCCGAATGTTCTCAAGACGCTCGGTCGTTTGGGCATCACTCGTGAGTTCCCGGCGTTCCCGTCGATGCTGTTGGGTGCGGG TGCGATGAGTCCAATGGAAGTGGCGACCATGTACCAGACCCTGGCCAACGGTGGCTTCAATACACCGATGCGCGGAATTCGTAGCGTGTTGACGGCCGAA GGCGAACCGCTCAAGCGTTATCCGTTCCAGATTCAACAGCGCTTTGACCCGGCCTCGATCTACCTGATCCAGAACGCCATGCAGCGCGTGATGCGCGAAG GTACAGGGCGCTCGGCCTACAACGTGCTGCCAGCCAACCTGACGCTGGCCGGCAAGAGCGGGACCAGTAACGATTCGCGGGACAGCTGGTTCGCCGGTTT CAGCCAGGATCTGCTGGCGGTGGTCTGGCTCGGACGCGATGACAACGGTAAAACACCGTTTACCGGTGCCACCGGCGCGTTGCAGGTATGGACCAGTTTC ATGAAGAAGGCCGACCCATTGCCGCTGAACATGCCGCAGCCGGACAATATCGTCCAGGCCTGGATCGATCCGCATACCGGCCAGGGTTCCGATGCCAACT GTCCGGGTGCGGTTCAGATGCCGTATATTCGCGGCAGCGAACCGCCACCCGGTACCGCGTGCGGTGCCAGTGCGCCCGCCAGCGCTGAATCGGTGATGGA TTGGGTCAAGGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCACGTGAACAAGTTGTTGATTCCAGCTATTACAGTTTTGGCATTGCTCGGTGGTTGCGCCAGCGTGGAGCGGGGCTCTATTCCGGTG GTGGATTCCAGCACAACGGTGTCCAACAACGACCGGATTTCTGCCAATGGTGGCTTCCGTCAAACCGTCACCAACCGTCCTGCCCAGGCCCGGCCTCAGG CGCAAGCCGTGCCCCAGGATTCGGGTGTAGTGGTCATGATCCCGGGCGGCGGCGCAGCTACCTCAGCTCCGATCAGTACGCAGCCATGGACGCCTGGCCC GAGTACGTCGGGCCCGATCGACTCCACGCCGATTCAAACGGCACCGATTAACCAGGGTACCTACAACATGCCGTCGACGCCGAGCGGAATCCCTTCTGCC AGCAGCGCCGGTGGGCTGTCCGCTGATGAGCAGTTGGATGGCCCGGTGCTGGCGTTGCTCACCACTGCCCAACAGCAGCAATCGGGTGGCGATTTGAACG
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| Amino Acid Sequence |
>penicillin-binding protein
MTRTRSPRSRKKPPSRGLRPWLGWALKLGLVGLVVIAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKEDFLTELDALGYRREPVSNGPGA AAVSGNTVDLNTRGFQFYEGLEKPQPVRVRFSGDYVAELSSLNGSKLPVVRLEPLMIGGIYPKNLEDRILIKIDQVPPYLLDTLIAVEDRDFYSHWGVSP KSIARAIWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLH QVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVATPEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKAEASVNDTFKRLAGRKGSDDVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLTALEKPSKYTLTSWLSDDPLSVKGAD GQMWTPHNFDRRSHGTIFLYQGLAHSYNISTSRLGLELGVPNVLKTLGRLGITREFPAFPSMLLGAGAMSPMEVATMYQTLANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQRFDPASIYLIQNAMQRVMREGTGRSAYNVLPANLTLAGKSGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTSF MKKADPLPLNMPQPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPPGTACGASAPASAESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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