Pseudomonas sp. PAMC 26793, D109_RS0118790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039314, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAGGGCCACGGCAAACCGATCCTGCAATTCGGCAAGCTCAACGTCGGTTTGACCAAGATCGAACCCGCCGGCCAATACGCACTGAAATTGACCTTCGA TGACGGTCATGACAGCGGATTGTTCACCTGGGACTACCTCTATCAACTTGCCGTGCGTCAGGACGCGCTGTGGGCTGACTATCTGGCCGAGCTGAAAGCC GCCGGAAAAACCCGCGACCCGAGCCAGTCGGTCGTACGGCTGATGCTCTAGCTCAGGCCTCTTGCTCATTAGTGGGCATTTTCTAATTCCATCTGCTTGA ATGCCCCTCTGTCGTGGCCAACGATTGGCCCGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAACTGGCAAGTTCCCTGCATTTGACGATGCGGTA TTAACGGTCACCCGAGCAGTAGTACCAGGCTGTGCTGTGTGGCAAGTAGTGGTACACAGCGGTACCCGGTACTCGTCTGTCGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>D109_RS0118790
ATGAGTAACAAGAACAACGATGACTTGAAACGCCAAGCCTCGGAAAACACCCTGGGACTGAACCCGATCATCGCGTTACGGAAAAAGGATTTACTGGCAT CCGCTCGGATGGTGCTGACCCAGGCCATCAAACAACCGTTGCACAGCGTCAAGCACGTCGCCCATTTTGGCGTCGAATTGAAGAACGTGGTGTTTGGCAA ATCACAGCTGACACCCGAGGCCGACGACCGCCGCTTCAACGACCCGGCGTGGACCCAGAACCCGCTCTACAAACGTTACCTGCAAACCTACCTGGCGTGG CGCAAGGAGCTGCACGACTGGATCGGTGACAGCAACCTGTCGGAGCACGACATCAGCCGCGGCCACTTTGTCATCAACCTGATGACCGAAGCCATGGCGC CCACCAACAGCGCGGCCAACCCGGCGGCAGTTAAACGCTTCTTTGAAACCGGCGGCAAGAGCCTGCTGGATGGCCTGTCCCACCTGGCCAAGGACATGGT GCACAACGGCGGCATGCCAAGCCAGGTCAATATGGGCGCCTTTGAAGTGGGCAAGAGCCTGGGCACCACCGAAGGCGCCGTGGTGTTTCGCAACGATGTG CTGGAGCTGATCCAGTACCGGCCGATCACCGAGCAGGTGCACGAACGCCCGCTGCTGGTGGTGCCGCCGCAGATCAACAAGTTCTATGTATTCGACCTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAATAACCAGCAGACGTTTATCGTCAGCTGGCGCAACCCCACCAAGGCCCAGCGCGAGTGGGGCCT GTCGACCTATATCGAGGCGCTGAAAGAAGCGGTCGATGTGGTGAGTGCGATCACTGGCAGCAAAGACATCAACATGCTTGGCGCCTGCTCCGGCGGCATC ACCTGCACCGCCCTGCTGGGCCACTACGCGGCGCTGGGCGAGAAGAAGGTCAACGCCCTGACCCTGCTGGTGAGCGTGCTGGACACCACCCTGGACACCC AGGTGGCGCTGTTCGTGGATGAGCAGACCCTGGAAGCGGCCAAGCGCCATTCCTACCAGGCCGGCGTGCTCGAAGGCCGAGACATGGCCAAGGTATTTGC CTGGATGCGCCCCAATGACCTGATCTGGAATTACTGGGTCAACAACTACCTGCTGGGCAACGAGCCGCCGGTATTCGACATCCTGTTCTGGAACAACGAC ACCACCCGCTTGCCGGCCGCGTTCCACGGCGACCTGATCGAGCTGTTCAAGAACAACCCATTGGTGCGCGCCAATGCCCTCGAAGTGTGCGGCACGCCGA TCGACCTGAAGCAGGTCACCGCCGATATCTATTCGTTGGCCGGCACCAACGACCACATCACACCGTGGCAGTCCTGCTACAAGTCGGCACAGCTGTTTGG CGGCAAGGTTGAGTTTGTGCTGTCCAGCAGCGGGCATATCCAGAGCATCCTGAACCCGCCGGGCAACCCCAAGTCGCGCTACCAGACCAGCGACACGATG CCGGGCAAGGCCCTGGACTGGCAGGAGAACGCCACCAAGCACACCGATTCGTGGTGGCTGCATTGGCAGGCGTGGCAGGCGGAGCGGTCGGGCAAGTTGA AGAAGGCGCCGACGGCGCTGGGTAATAAAGCGTACGCAGCGGCTGAAGCGGCGCCGGGCACATACGTTCACGAAAGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGGAATGGGATCAAATGTGGGAGCTGGCTTGCCTGCGATGGCATCAACTCGGTATGCCTGATACACCGCAGCGTCTGCATCGCAGGCAAGCCAGCTCC CACATTAACCGTGTTCCCGCAGGGAAATAGCGCCATTTTGCAGGGTAAGCCCATGCCGCAACCGTTCATCTTCCGTACCATCGACCTGGATGGCCAAACC ATCCGCACGGCGGTACGCCCGGGCAAGCCTCACTTGACGCCGCTGCTGATTTTCAACGGCATCGGCGCCAACCTTGAGCTGGTGTTTCCGTTCGTCCAGG CCCTGGACCCGGACCTGGAAGTGATTGCCTTTGATGTGCCAGGCGTCGGCGGTTCGTCGACCCCCAGCCGGCCTTATCGCTTTCCCGGCCTGGCCAAGCT CACCGCACGCATGCTCGATTACCTGGACTATGGCCAGGTCAACGCGGTGGGCGTTTCCTGGGGCGGGGCGCTGGCGCAGCAGTTCGCGTATGACTACCCG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKRQASENTLGLNPIIALRKKDLLASARMVLTQAIKQPLHSVKHVAHFGVELKNVVFGKSQLTPEADDRRFNDPAWTQNPLYKRYLQTYLAW RKELHDWIGDSNLSEHDISRGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDMVHNGGMPSQVNMGAFEVGKSLGTTEGAVVFRNDV LELIQYRPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNQQTFIVSWRNPTKAQREWGLSTYIEALKEAVDVVSAITGSKDINMLGACSGGI TCTALLGHYAALGEKKVNALTLLVSVLDTTLDTQVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIELFKNNPLVRANALEVCGTPIDLKQVTADIYSLAGTNDHITPWQSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKSRYQTSDTM PGKALDWQENATKHTDSWWLHWQAWQAERSGKLKKAPTALGNKAYAAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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