Pseudomonas sp. PAMC 26793, D109_RS0117675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039314, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGACAGCTTCAGCCTGGGGGAAGGTGACCTGGAGCAACTGCGTCGCCCGGGTGTGCTGGTGATTCATAACGACCAGGAAGGAGGCGTGCAGGAAGTGAC AGCCCATGTGTCCCGGCATGTGGAGAAGCCAGGGTTGAAGCTGGTGCCGGGGCAGGAGCGGGCCAAGGTGGTCGGTTGACCCGGATGCCGAAAAGTGGGA TCCAATTCACAAAATAGCTGCGAACTTTTCCCATCTTTTGGCTACTAACCAGTCTGGATACCAGATTGATGGCCAACTAATGGCAATTGTAAGCGCCATA GTTGAAGTTGTATCAAAACTGTTACCGCTTGTCGGAATAAAAATTCCAAATGCAAGCACTTAAGCGTTGCTTGATTTATTTATTGTTAATAATCAGCAAC TTATAGGCCTGCGAAACATAACTTCCAATAAAGCCAGAATGTTGGCCCACCGGAAGTTCGATGTTAGTTTGCCGGCCCCCGCTTTTTCGACGGATCGAAC
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| DNA Sequence for Gene |
>D109_RS0117675
ATGTCTTTATTACTGCCACGGACTCGGCTCCTGCTGGGCGTTTGCCTGCTGACTTGCTTCGCACTCAATAGTGCGGTGGCTGCGCCTACGCCTGGCGATC AGGACCTGATCCGCGACCGGCAAAACCGTCTGCTGGAAGAACAGCGCCGGCGCCTTGAAGACCTCAAGGAACTGCCCGGCAAAGAAGCCAAGCCCGAAGC GCCTGCCACCCCGGCTGACACCCGCTGCTTCCCGATCAAAGACATCGAACTCAAGGGCGCCGACAGCCTGCCTGCACCGGACCGCGAGCGCCTGCTCAAG CCGTATATCGGCCAGTGCCTGGGCGTGTCCCAGCTCAATCAAGTGCTCAAGGCGATCACCGACTACTACATCGACAAAGGCATGGTCACCAGCCGTGCTT ACTTGCCGCAGCAGGACCTGTCCACCGGCCACCTCCAGGTGTTGGTGGTGGAAGGCAAACTCGAAGGCTTGAAGGGCGCCGACGGCAGCAACCTGTCCCA ACGCGAGCTGGCCATGGCCTTTCCCGGCAAGGTCGGCGAGCAGCTCAACCTGCGGGAAATCGAGCAGTTGGTGGACCAGTTGAACCGCTTGCCGTCCAAG CAGGCACAAATGGAACTGACCCCCGGCAGCCAGGTGGGCGGCAGTGAAGTGCAGGTCAAGAACGTCCCGCAAAAGCCCTGGCGCGCCAGCCTGTCGCGCA ATAACGACGGGCAGAAAAGCACCGGCGAACAGCAGTGGGGCGCCGGCCTTGAGTGGGACAGCCCCCTGGGCCTGGCCGACCAGCTGGTGTTGCGCGGCGG CCACGATGCCGTCAGCGACCACCAGAAAACCTCGAAAAACACCATGCTCTACTACAACGTGCCGTGGGGCTGGTGGAACTTCAGCTACACCTACAGCGAG AGTGATTACCGCACTTACGGCGTGACCGACGACTACAAATTCAAGCAGAACGGCGACAACGAAAACCATCAACTGCGCGCCGAGCGCGTGATCCATCGCG ACGACGTCAGCAAGACCTCGGTCAACGTCGGCCTGGCCCATTTGCGCACCAACAACTACATCAACGACGCCCACCTCGAAACCAGCAGCAACCGCCTCAG CGAACTGCAACTGGGCATCAACCACGGCCGCCGCATCGGCAATGCCTTCGTCAACCTCGACCTGGGCATGCAGAACGGTATCGGCGCCTTCGATGCCCAA GCTGAAAACGAGCGCGATCAGTACGGCAATCGCCTGCCCAACGCGCGCTACCGCAAATACACCGCCACCGTCAGCTATTTGCAGCCGTTCACGCTGTGGG GCGAGTCGTTCAGTTTTTCCAGCCTGGCCACCGGCCAACGCAGTGAAGACATTCTGTTCAGCCCCCAGCGCATGAGCCTCGGCGGCTCGGCCTCGGTGCG CGGCTTCAAAGACCAGCAGCTCACCGGCGACTGCGGCGGCTACTGGCGCAACGACGTGCGCTGGGCGCGCCCGGTGACCTGGGACTGGATGCGCCCGGCC TTTGCCGAATACGGCGCCAGCGTCGGCTACGACCAGGGTGTGATCAGCAATGGCCGCTACAACGACAACGTGCACGGCCGGGTCTCGAGCAACTCGCTGG AGCTGTTCGCCCGTGGCAAATACGTTAGCACCAGCGTGACCTTTGCCCATTCCCTGGAACGCCCGGCAGTGATGAGCGAGCGCGAAGCGCCGATCTACTT CCGCATGGATTTCTTCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAACGCCCCGTTACATCGAGAATATGACAATGGATGTTCGCCACTTTGCCTTCCTGGCCCGCCAACCTTCTGCTGCGCTGAAACCGCGAGACTCGTTC TTCGGCCTGCCCAAGCGCGGTTTGGTGCTGATCCTGGCCAACGCGCTGTTCTGGCAGCCGCTGCTGGCCCAGGCCGAAGGCATTGTGGTCAGCGCGCCGG GCACCACCGTCGGCCAGGCCGGCAATGGCGTGCCGGTGGTGAACATCGCCACCCCCAATGGCAGTGGCTTGTCCCATAACCAATTCAAGGACTACAACGT CGGCCCCAATGGCGTGATCCTCAACAACGCCAACGGCCCCGTGACGAACACCCAACTGGGTGGCTACATCGTCGGCAACCCCAACCTCAAGGGCGGCGCG GCCAGCGTCATCCTCAACGAAGTCAACGGCGGCAGCCCCAGCCAACTGCGCGGCTACACCGAAGTGGCGGGCCAGTCGGCCAAAGTCATCGTCGCCAACC
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| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MSLLLPRTRLLLGVCLLTCFALNSAVAAPTPGDQDLIRDRQNRLLEEQRRRLEDLKELPGKEAKPEAPATPADTRCFPIKDIELKGADSLPAPDRERLLK PYIGQCLGVSQLNQVLKAITDYYIDKGMVTSRAYLPQQDLSTGHLQVLVVEGKLEGLKGADGSNLSQRELAMAFPGKVGEQLNLREIEQLVDQLNRLPSK QAQMELTPGSQVGGSEVQVKNVPQKPWRASLSRNNDGQKSTGEQQWGAGLEWDSPLGLADQLVLRGGHDAVSDHQKTSKNTMLYYNVPWGWWNFSYTYSE SDYRTYGVTDDYKFKQNGDNENHQLRAERVIHRDDVSKTSVNVGLAHLRTNNYINDAHLETSSNRLSELQLGINHGRRIGNAFVNLDLGMQNGIGAFDAQ AENERDQYGNRLPNARYRKYTATVSYLQPFTLWGESFSFSSLATGQRSEDILFSPQRMSLGGSASVRGFKDQQLTGDCGGYWRNDVRWARPVTWDWMRPA FAEYGASVGYDQGVISNGRYNDNVHGRVSSNSLELFARGKYVSTSVTFAHSLERPAVMSEREAPIYFRMDFFL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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