Pseudomonas sp. PAMC 26793, D109_RS0117185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039311, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGTCAGCTCCAACTACGCGGCCGTGGCCTGTATCGACCTGCCGACTTGTCACGGGCAGTGGTGGCCGGCGGCGGATTTCGCCAATGGCTTTCACCTGA CCCAGCATATCGGCCCCAATTACCTCGGTGGGCAGCTGGACAGTGATGCACGCACGGCGATTCACCTGACCCATCGGATTGGCGCGCTGCTGGTCACCGT CGTGCTGCTGGGCCTGGCCTGGCAACTCAAGGTGGTCGGCATGACCCGCTTGGCCGGCCTGTTGCTGATCGCCCTGGCGGCGCAAATTTGCCTGGGCTTG AGCAACGTGTATTTCCACCTGCCGCTGCCGGTTGCGGTCGCGCATAACGCCGGCGGCGCGGCGTTGCTGCTGACGCTGGTGCTGGTCAATTACCACGCCC GCACCAGCCTGGTTCGAGTGCGACATCAGTTACCGTTCGGCTGGCGCTTCAGCCCGCGTAAACACGTGTCGGGCCTCATGACCCTAAAAGGAGAGATGCC
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| DNA Sequence for Gene |
>D109_RS0117185
ATGGCGACCTTGATCGGCGAGCGTCATAGCCAGGCGATCTGGCGTGACTACCTGGAGCTGACCAAGCCCAAAGTGGTGGTGCTGATGCTCATCACCTCGC TGGTGGGCATGTTCCTCGCCACCCGCGCCGGGGTGCCTTGGCCGGTGCTGATTTTCGGCAACCTGGGGATCGCGCTGTGTGCCGGCGGCGCGGCGGCGGT GAACCATGTGGTGGATCGGCGCATCGATGCGCTGATGGCGCGCACCCATAAGCGTCCGCTGGCGGAAGGGCGCGTATCGCCTGTGGCGGCGCTTGTTTTT GCGCTGGTGCTGGCGGTTGCCGGGCTGGCGCTGTTGCTGGCGTTTACCAATCCACTGGCCGCCTGGCTGACCCTGGCCTCGCTGTTGGGCTACGCGGTGA TCTACACCGGTTTCCTCAAACGTGCGACGCCGCAGAACATCGTCATCGGCGGCCTGGCCGGCGCCGCGCCGCCGTTGCTGGGTTGGGTTGCCGTCACTGG CTACGTCAGCGCCGAGCCGCTGCTGCTGGTGCTGATCATCTTCGCCTGGACCCCGCCGCACTTCTGGGCCCTGGCGATTCACCGCAAGGAGGAATACGCC AAGGCCGACATCCCGATGCTGCCGGTGACCCACGGCGAGCACTACACCAAGGTGCATATCCTGCTCTACACCTTCGCCCTGTTGGCGGTCAGCCTGATGC CGTATGTCATCCACATGAGCGGCTTGCTGTACCTGGTGTGCGCGCTGGTTCTGGGCGGGCGCTTTCTGCAATGGGCCTGTGTGCTGTACCGTGGCAGTCG GCCGCACGCGGCGATCAACACCTTCAAGTACTCTATCTGGTACCTGTTCGCGCTGTTTATCGCCCTGCTCGTAGACCACTACCTATTGTTGAACCTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGAACTCAAAAAACTGTCTTCATTCTGGTGGCCATTGTCGCGTTGATCATGGGCCTGACCGTCAACAAAGTACTGAGCGGCAAAGGCCAAGGCGACCC GACGGCCTTGATCGATGCGGGCATCATCCTGCTGCCGCAAAGCCGCCAGTTGCCGCCGGTGACCATGACCAACCAGGACGGCCAGCCGGTGGTGGTCAAC GAGCTGAAAGGCAAGTGGAGCGTGTTGTTCTTCGGTTACACCTTCTGCCCGGACATCTGTCCGACCACCCTCGCCCAACTGCGCCAGATCAATAGCGAAC TGCCTAAAGACGTGGTGGATAAGTTGCAAGTGATCCTGGTCAGCGTTGACCCGAACCGCGATACGCCGGCGCAGCTCAAACAGTACCTGGGCTACTTCGA TCCCCAGTTCGAAGGCCTGACCGGCGCGAATGTGGAGGATGTGCAGAAGGTTTCGAACGCGGTAAGTATTCCGTTCATTCCGGCGGACACCAGCAAGCCC
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MATLIGERHSQAIWRDYLELTKPKVVVLMLITSLVGMFLATRAGVPWPVLIFGNLGIALCAGGAAAVNHVVDRRIDALMARTHKRPLAEGRVSPVAALVF ALVLAVAGLALLLAFTNPLAAWLTLASLLGYAVIYTGFLKRATPQNIVIGGLAGAAPPLLGWVAVTGYVSAEPLLLVLIIFAWTPPHFWALAIHRKEEYA KADIPMLPVTHGEHYTKVHILLYTFALLAVSLMPYVIHMSGLLYLVCALVLGGRFLQWACVLYRGSRPHAAINTFKYSIWYLFALFIALLVDHYLLLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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