Strain | Pseudomonas sp. PAMC 26793 ctg7180000039304, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AGCACGAGTAGATGGCAGAACTGATGGAAATGCTCGACGGCCCAAGGACCGCACAACAGGAATTGTTCTACGACCTCGAAGATGCGATGGCTGTTATCGC CTGGTCGGTCAATGAGCTGGCCAGTATCGCCGGGGTCGCCAAATCACCCGACGAAGCTGTCGCTCTGATGAAGATGGGCGCCCTGCTCGCTGCTCAGCAG GAAAAGCTCAGCGGGTACGCGGATGAGGTGAAGGCGGGAAGGATTGTGCGGGGGGAGGATCAATAGCGGTCAATACGCTACGCCCCCAACATTCTTTCAC ATCCCTTTCACAGTTGAGCGCTTATGGTTACCCCAGCTCCTAAGTGAACACCTTTAAGCCCGCACTCCCCATCGCGGGCTTTTCTTTGCCTGGAATTCAG TAAAAGGGGATATCAAAACCTTCATCCAGTTTCATTTGTTGATGGCCTGGGCTGTCGCCTTAATGCTCCAACACGAACTCGTGCACAGGAGCAAAAAATA
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DNA Sequence for Gene |
>D109_RS0111965
ATGAAAAAACGTCAACCGTTACTTCAGCTCAATACCTTGGCAGTGGCGCTGGCATTTGCCTTGCCGGCCATGAGCTACGCAAGCGATCAGTCCGACTCCA AGGGCTTCGTCGCGGACAGCAGTTTGAATATCCTCAACCGCAACGTGTTCTGGAACCAGAACGGCAGCGGCAACCACACCCGTGACTGGAGCCAGGCGCT GATGGCGACCTACAGCTCGGGGTTCACCCAAGGTACCGTTGGCATCGGCATTGATGCGTTTGCCGACCTGGCGTTGCGCATCGACGGGAACACCGACCGT GCCGGTGGCCCGACCATGCCATCCGACGCCAATGGCAATCCGGATCGAGGCTATGCGAAGGCCGGCGGAGACATCAAATTCCGTGTTTCCAACACCACGC TCAAGATCGGCGACTTGCAGCCCACGTCGCCGGTATTCGCCACCGCCGACAACTACCTGATGCCCCAGACCGCATCAGGCTTCCAGATCGACAGCCATGA AATCACCGGCCTGAACCTGGAGGCCGGCCATTACACCTCCGGCACCGGTAACACCACCACCTCGCGCAGCGGCGACATCCTCGCCAGCTATGCAGGCGTG GCTGCGTCGTCGGCCAGCTTCGCCGGGGGCAAGTACCAGTTCAGCAAGGAATTCACCGCTTCGCTGTACGGCGCGCACCTGGAAGACGTCTGGAACCAGT ACTACGTCAACTTGAACCTTGTTCATCCACTGACCGATGACCAATCCGTCGCGCTGGACTTCAACCTCTATCGCACACTCGATGATGGCAGCGCCAAGGC CGGGACCATCGACACCACCGCCGCCTCGCTGGCGGCTGCCTACACTCTGGGCGCGCAGACCTTCACCCTGGCCGGACAGAAAGTTCATGGTGACGAGCCA TTCGACTACGTCGGCTTTGGGGAGACCAATGCCGGTGTCGGTGCTGGCCGCTACGGCAACTCGATCAACCTCGCCGACTCGGTGCAGTACTCCGACTTCA ACGGCCCGGGCGAGCGGTCCTGGCAGATGCGCTACGACCTGGACATGGGTGCCTTCGGCGCCCCGGGCCTGAGCTTCATGGCCCGTCATATTCGCGGTTC CGGCATCGACGGAACGCATACTCCCGGCAATTCGGCCTACACCGGGTTCTATGGTGCCAACGACCAGGAACACGAAACCGACGCCGAAGTGAAATACGTC GTACAGAGTGGCCCGGCCAAGAAACTGTCCTTCCGCCTGCGGGAAGCTTGGCACGATGGCGACGCGTCCACCGGGGGGCATCTGGTGCAGACGCGCCTGA TTACCGAGTATCCGTTGAATATCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ACAGACGGGAGTGCCCGGTTGATGGATCGACCGGGTACTCTGCGTGGCCAGGTATTGTTCGGTAGGCGTTTTGATTCCACACGCACAAAAAAGGCGCTAC CAAGAGCGCCTTTTTTGCTACCGCTGACTTATTGCAAACTAACCTGACGCAGTTCGGGTTCTTTCCCGCTGCCAATCGTGATGCGCTTGGGTTTGGCCTC TTCAGGAACCACGCGCAGCAAGTCGATGCTTAGCAGCCCGTTGTTCATCGAAGCACCGCGCACCTCAATGTGATCGGCCAGACGGAACGACAACCGAAAT GCTCGTTGCGCGATGCCCTGGTGCAGATAGGTGACTTGTTTCTCGGTTTCGCGCTTGTCGCCAACGACTGTCAAAACGCCCTTCTCGACCTGAATATCCA GATCCGCTTCAGTTAGCCCGGCGACTGCAATGACAATGCGATATTCGTCATCACCGTGCTTTTCCACATTGTGAGGCGGATAAGTGTTCGGAGCCTCGCT
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Amino Acid Sequence |
>porin
MKKRQPLLQLNTLAVALAFALPAMSYASDQSDSKGFVADSSLNILNRNVFWNQNGSGNHTRDWSQALMATYSSGFTQGTVGIGIDAFADLALRIDGNTDR AGGPTMPSDANGNPDRGYAKAGGDIKFRVSNTTLKIGDLQPTSPVFATADNYLMPQTASGFQIDSHEITGLNLEAGHYTSGTGNTTTSRSGDILASYAGV AASSASFAGGKYQFSKEFTASLYGAHLEDVWNQYYVNLNLVHPLTDDQSVALDFNLYRTLDDGSAKAGTIDTTAASLAAAYTLGAQTFTLAGQKVHGDEP FDYVGFGETNAGVGAGRYGNSINLADSVQYSDFNGPGERSWQMRYDLDMGAFGAPGLSFMARHIRGSGIDGTHTPGNSAYTGFYGANDQEHETDAEVKYV VQSGPAKKLSFRLREAWHDGDASTGGHLVQTRLITEYPLNIF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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