Pseudomonas sp. PAMC 26793, D109_RS0111965

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PAMC 26793 ctg7180000039304, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGCACGAGTAGATGGCAGAACTGATGGAAATGCTCGACGGCCCAAGGACCGCACAACAGGAATTGTTCTACGACCTCGAAGATGCGATGGCTGTTATCGC CTGGTCGGTCAATGAGCTGGCCAGTATCGCCGGGGTCGCCAAATCACCCGACGAAGCTGTCGCTCTGATGAAGATGGGCGCCCTGCTCGCTGCTCAGCAG GAAAAGCTCAGCGGGTACGCGGATGAGGTGAAGGCGGGAAGGATTGTGCGGGGGGAGGATCAATAGCGGTCAATACGCTACGCCCCCAACATTCTTTCAC ATCCCTTTCACAGTTGAGCGCTTATGGTTACCCCAGCTCCTAAGTGAACACCTTTAAGCCCGCACTCCCCATCGCGGGCTTTTCTTTGCCTGGAATTCAG TAAAAGGGGATATCAAAACCTTCATCCAGTTTCATTTGTTGATGGCCTGGGCTGTCGCCTTAATGCTCCAACACGAACTCGTGCACAGGAGCAAAAAATA
DNA Sequence for Gene
>D109_RS0111965
ATGAAAAAACGTCAACCGTTACTTCAGCTCAATACCTTGGCAGTGGCGCTGGCATTTGCCTTGCCGGCCATGAGCTACGCAAGCGATCAGTCCGACTCCA AGGGCTTCGTCGCGGACAGCAGTTTGAATATCCTCAACCGCAACGTGTTCTGGAACCAGAACGGCAGCGGCAACCACACCCGTGACTGGAGCCAGGCGCT GATGGCGACCTACAGCTCGGGGTTCACCCAAGGTACCGTTGGCATCGGCATTGATGCGTTTGCCGACCTGGCGTTGCGCATCGACGGGAACACCGACCGT GCCGGTGGCCCGACCATGCCATCCGACGCCAATGGCAATCCGGATCGAGGCTATGCGAAGGCCGGCGGAGACATCAAATTCCGTGTTTCCAACACCACGC TCAAGATCGGCGACTTGCAGCCCACGTCGCCGGTATTCGCCACCGCCGACAACTACCTGATGCCCCAGACCGCATCAGGCTTCCAGATCGACAGCCATGA AATCACCGGCCTGAACCTGGAGGCCGGCCATTACACCTCCGGCACCGGTAACACCACCACCTCGCGCAGCGGCGACATCCTCGCCAGCTATGCAGGCGTG GCTGCGTCGTCGGCCAGCTTCGCCGGGGGCAAGTACCAGTTCAGCAAGGAATTCACCGCTTCGCTGTACGGCGCGCACCTGGAAGACGTCTGGAACCAGT ACTACGTCAACTTGAACCTTGTTCATCCACTGACCGATGACCAATCCGTCGCGCTGGACTTCAACCTCTATCGCACACTCGATGATGGCAGCGCCAAGGC CGGGACCATCGACACCACCGCCGCCTCGCTGGCGGCTGCCTACACTCTGGGCGCGCAGACCTTCACCCTGGCCGGACAGAAAGTTCATGGTGACGAGCCA TTCGACTACGTCGGCTTTGGGGAGACCAATGCCGGTGTCGGTGCTGGCCGCTACGGCAACTCGATCAACCTCGCCGACTCGGTGCAGTACTCCGACTTCA ACGGCCCGGGCGAGCGGTCCTGGCAGATGCGCTACGACCTGGACATGGGTGCCTTCGGCGCCCCGGGCCTGAGCTTCATGGCCCGTCATATTCGCGGTTC CGGCATCGACGGAACGCATACTCCCGGCAATTCGGCCTACACCGGGTTCTATGGTGCCAACGACCAGGAACACGAAACCGACGCCGAAGTGAAATACGTC GTACAGAGTGGCCCGGCCAAGAAACTGTCCTTCCGCCTGCGGGAAGCTTGGCACGATGGCGACGCGTCCACCGGGGGGCATCTGGTGCAGACGCGCCTGA TTACCGAGTATCCGTTGAATATCTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACAGACGGGAGTGCCCGGTTGATGGATCGACCGGGTACTCTGCGTGGCCAGGTATTGTTCGGTAGGCGTTTTGATTCCACACGCACAAAAAAGGCGCTAC CAAGAGCGCCTTTTTTGCTACCGCTGACTTATTGCAAACTAACCTGACGCAGTTCGGGTTCTTTCCCGCTGCCAATCGTGATGCGCTTGGGTTTGGCCTC TTCAGGAACCACGCGCAGCAAGTCGATGCTTAGCAGCCCGTTGTTCATCGAAGCACCGCGCACCTCAATGTGATCGGCCAGACGGAACGACAACCGAAAT GCTCGTTGCGCGATGCCCTGGTGCAGATAGGTGACTTGTTTCTCGGTTTCGCGCTTGTCGCCAACGACTGTCAAAACGCCCTTCTCGACCTGAATATCCA GATCCGCTTCAGTTAGCCCGGCGACTGCAATGACAATGCGATATTCGTCATCACCGTGCTTTTCCACATTGTGAGGCGGATAAGTGTTCGGAGCCTCGCT
Amino Acid Sequence
>porin
MKKRQPLLQLNTLAVALAFALPAMSYASDQSDSKGFVADSSLNILNRNVFWNQNGSGNHTRDWSQALMATYSSGFTQGTVGIGIDAFADLALRIDGNTDR AGGPTMPSDANGNPDRGYAKAGGDIKFRVSNTTLKIGDLQPTSPVFATADNYLMPQTASGFQIDSHEITGLNLEAGHYTSGTGNTTTSRSGDILASYAGV AASSASFAGGKYQFSKEFTASLYGAHLEDVWNQYYVNLNLVHPLTDDQSVALDFNLYRTLDDGSAKAGTIDTTAASLAAAYTLGAQTFTLAGQKVHGDEP FDYVGFGETNAGVGAGRYGNSINLADSVQYSDFNGPGERSWQMRYDLDMGAFGAPGLSFMARHIRGSGIDGTHTPGNSAYTGFYGANDQEHETDAEVKYV VQSGPAKKLSFRLREAWHDGDASTGGHLVQTRLITEYPLNIF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site