Pseudomonas sp. PAMC 26793, D109_RS0109850
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCCCGCCGGCACTGCTCGGCCGTCTGGTGACCATTCCGTACTACCCGCTCAGCGACGAGATGCTCAAGGCAATCACCCGCCTGCAACTCAACCGCATCA AGAAGCGCGTGGAGAACACCCACAAAGTCGCCTTCGATTACGACGACGACGTGGTCGACCTGATCGTGTCCCGCTGCACCGAAACCGAAAGCGGCGGACG GATGATCGACACCATCCTCACCAACAGCCTGCTGCCGGACATGAGCCGCGAATTCCTCACCCGCATGCTCGAAGGCAAGGCGCTGGCGGGGGTGCGGATC AGCACGCGGGATAACGAATTGCACTACGACTTCAACGATTGACCTGACGGAATGCGATCAAAACTGTGGGAGCGGGCTTGCTCGCGAACGCGGTGTATCA GTTGATGCATCCGGTGACTGATTCACCGCGTTCGCGAGCAAGCCCGCTCCCACATTTGGAGCCGGTTCCTACAGTTATTACGCAATTTACGGGTTAACCG
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| DNA Sequence for Gene |
>D109_RS0109850
ATGTTATTCAACCAATCGTCACGCCTGGCCAAGATCACCAGCCCACTGGGGCCGGATGTGCTGCTGCTCAATGAAATGGGTGGCGGCGAAGAGCTGGGGC GACTGTTCAATTTCGAATTGCAGCTGACCTCGCTGGACGCCAACATCGACCTCAACCAGTTGCTGGGCAAGCCCATGAGCCTGAACCTGCAACTGGCGGA CGGGGGCGAGCGGCACTTCCACGGCATCGTCGCCCGCTGCAGCCAGAACATCGACCAGGGCCAGTTCGCCAGTTACCAGGTGACCCTGCGCCCGTGGTTG TGGCTGCTGAGCCGCACCTCCGACTGCAGGATTTTCCAGAACCTGAGCATCCCGCAGATCATCAAGCAGGTGTTCCGCGACCTGGGCTTTTCCGACTTCG AAGACGCTCTGAGCCGGCCGTACCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGCTTCGATTTCGTCAGTCGCCTGATGGAACAGGAAGGCAT CTACTACTTCTTCCGCCACGAACAGGACCGCCACGTGCTGGTGCTGGCCGATGCCTACGGAGCCCACGCCAACGTGCCCGGCTACGCCTCGGTGCCCTAC TACCCCAAGGACGAGCAGCAGCGCGAACGCGACCATATGCACAACTGGCACCTGGCACAGGAAGTACAGCCCGGCTCCCTTGAGCTCAACGACTACGACT TCCAGCGTCCCAGCGCCAGCATCGACGTACGCTCGGCCATGCCGCGCCCGCACACCGCCGGCGACTACCCGCTGTACGACTACCCCGGCACCTACGTCAA AAGCGAAGACGGCGAACACTACGCCCGCACCCGCATCGAAGCCTTGCAAACCCTGCACGAACAAGTGGAGTTCAGCGGCAACGCACGGGGCCTGGGCTCA GGCCACCTGTTCAGCCTCACCGGCTTCAGCCGCCGCGACCAGAACCGCGAATACCTGATCGTCGGCGCCCGCTACTACATCTCCCAGGAAAGCCTCGAAA GCGGCGGTGGCGCGCCTTCGGCCCAGTTCGAAAGCACCCTCACCTGCATCGACGCGCAACAGAGTTTCCGCCCGCTGGCCAACACCTACCGGCCCATCGT CAAAGGCCCGCAAACGGCGCTGGTGGTGGGCCCCAAGGGCGAAGAAATCTGGACCGACCAATATGGCCGGGTAAAGGTGCATTTCTATTGGGACCGCCAC GACCAGTCCAACGAAAACAGCTCGTGCTGGATTCGCGTGTCGCAGTCCTGGGCCGGAAAAAACTGGGGCTCGATGCAGATTCCACGGATCGGCCAGGAAG TGATTGTGAGCTTCCTGGAAGGTGATCCCGACCGGCCGATCATCACCGGGCGGGTGTACAACGCCGAGCAGACGGTGCCTTACGACTTGCCGGAAAACGC CACCCAAAGCGGGATGAAAAGCCGCTCCAGCAAAGGCGGCACGCCGGCCAACTTCAATGAAATCCGCATGGAGGACAAGAAGGGGTTGGAGCAGTTGTAC ATCCATGCCGAGCGTAATCAGGACATCGTGGTGGAGGTGGATGAAAGTCATTCGGTGGGGCATGACCGGAACAAGAGTATTGGGCATAACGAGACGGTGA CGATTGGCTCAAACCGCCTGCGGGTCGTGCGCAACAACGACACCGTGATTGTGGGCGGGGCCAAGTCTGACAGTGCCGCCACGACCTACACCGTCGAGGC TGGCGACAGTATTCGCCTGGTGTGCGGCGCCAGTGTGATTGAGCTCAAGGCCGGTGGAGACATCAACCTGACCTGTGGCTCGTTCAACCTGTTTTCCACC GGCAGCAGCAAAATCCAGACGAAGGGCAAACTGGATATCAACCTGGGCAGTGACAAGGGCACGGTGCCCGGTGCCCAAGGCGTGCAAAGCACGATCAAGT CCGCCGTCGAATCAAAATTCCCCGGCAAGCCCGGCGCTGGTCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGATTTATCCACCATGAATTACCTGATCAACGAAGCCCAATTCACCCTGCCCGATGCAGAGGTGCAGGACACCTCGATCAACATTCTCAAGTTCGCCA AGCTGGGCACCACCCTGGTGGTGAGTCGCAGCCCCTTGGCAGATGGCGAGACCTTGCAAAACAACTTCGAGGGCCAGCTGAAAAAGCTCGAACAGCAGGT CAAGGACCTTCGTTATTCGCCGGCGCAAGCCATCAAGGTGGGGCCAGCGCAGGACATCGACGCCTTTGAAGTCCAGAACCGTTTCAACAAAGGCAGCGAC AATATTTACCAATATCAGTTGGCAATGCAGATACCCGGCACACGCAACCTGATCGCCTTGAGCTACGTCAAGACCCAGCCCCTGGGGCCTGCCGAGGCGG CACATTGGGCAACGCTCAAGAACACGCTCAACTTTGCCGTCACCCCCTGAGCAGAGTCTGAACAATGAGTGAAGACCTCTGGGCTGCCCGCGAAGGCGAC
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MLFNQSSRLAKITSPLGPDVLLLNEMGGGEELGRLFNFELQLTSLDANIDLNQLLGKPMSLNLQLADGGERHFHGIVARCSQNIDQGQFASYQVTLRPWL WLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSFDFVSRLMEQEGIYYFFRHEQDRHVLVLADAYGAHANVPGYASVPY YPKDEQQRERDHMHNWHLAQEVQPGSLELNDYDFQRPSASIDVRSAMPRPHTAGDYPLYDYPGTYVKSEDGEHYARTRIEALQTLHEQVEFSGNARGLGS GHLFSLTGFSRRDQNREYLIVGARYYISQESLESGGGAPSAQFESTLTCIDAQQSFRPLANTYRPIVKGPQTALVVGPKGEEIWTDQYGRVKVHFYWDRH DQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGTPANFNEIRMEDKKGLEQLY IHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGSNRLRVVRNNDTVIVGGAKSDSAATTYTVEAGDSIRLVCGASVIELKAGGDINLTCGSFNLFST GSSKIQTKGKLDINLGSDKGTVPGAQGVQSTIKSAVESKFPGKPGAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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