Pseudomonas sp. PAMC 26793, D109_RS0109810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCCAATAGCCATTGCACCCTGATCCATGGACTTTTCAGGGCACTGGCCAGGGGTAATCTTGTGATAACTAGTGATAGTCAAACACAGCGACATCATG CCTCCTTGCTGATACTTCACGCGCGGCCGTTCCCTGGGAGAACTGCTGCCGAGGGATCCACGACAGATCCTTCCAAAACCTTGAAAGCCTGCTTCAACCC GCGTAATTGCTGATCTTAACCGGCCTGTATGACAAAAATCCTGCCTCGGCACCTGCTTCGACTGATCAGTCGCGCAAGATGTTAAGCACCGCACATCTGT CATAGAGGGCGAATAGCTTACCTTGACAAGGCATAAGTACTACACCAAAAATGCACAACTTCTTGAACACCAGTGATGGCACTTTGAAATCAGCACGATA TCAAAGCGCTAAATATGACCAAGAAAACATGCAAAGTTCCTCGCGCAACTAATGCATGAGTTGCCCGTTATCTAACGGGCTGATAGGGAGATCGAATTTA
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| DNA Sequence for Gene |
>D109_RS0109810
GTGGATGTGCCTCTGCTGCTCGCCGCCGTTTCCGCGACTTCGCCTTGTGGCGAAGACTTGGAATATGACGCCGATTATTTGCATCTTGAGCGTGCCGCAC AGGGTCAACCCGAGCGCAGCATGGGCGACTCGATCCTGCCTGCCGAACCTCCGGAATGGCGCAGCATCCAGCAGCAAAGCCTCGACCTCCTGCAACGCAG CAAAGACCTGCGCATCACCCATTTCCTGTTGCAAAGCGCCCTCGCCCTCCAAGGCATCGCGGGGCTTGCCGACGCGCTCACGCTGATCAACGCGCTGCTG CGCGAATACTGGGCCGACCTGCATCCGCGCCTGGATGCCGATGAAGACAACGACCCCACCGTGCGCATCAACGCCCTCAGCGGCGTGGCCAGCGACGCGA ACATCCGCCTGCTGCGCGAAGCCATTCTCACCCGTTCGCGCACCTTTGGCCCCGTCAGCCTGCGCGCTGCGCTGAATGCCAGCGGGCTGCAGAGTTTCCC CGGCGAAAGCCTCGGCGCCGAACAGCTCAACGGCGCGTTTCTCGACAGCGATGCCGAGCAACTGCAAGCCACTCGCGACGCGCTGAACACCGCCCGCACC GCCTGTGATGCCATCGAACAATACGTCAGCGACCAGGTCGGTTCCGCCCAGGGCGTGGACCTCGGCCCCTTGAAGCAACTGCTCAAGCAGGCCGTGCAGA TACTCAACCAATACGCCCCACACAGCGGCGCCGCCAGCGAGCCCGAGGTTGTCAGTGACGACAATGCCCCCTCGGTTGAATACGCCGCCGCGCCCGTTGC AGCACGCCCGACCGGCGACATCGCAAGCCGCGATGAAGTGCTGCGCAGCCTCGACAAAATCCTTGCGTACTACACCCGGCACGAGCCTTCGAGCCCGCTG CCGGTGCTGTTGAACCGAGCGAAGAATCTGGTGCACGCCGACTTTGCGGCCATCGTGCGCAACCTGATTCCCGACGGCATGTCCCAATTTGAAAATCTGC GCGGGCCGGACAGCGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTACGGATCGCGCAGTTACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGTGCGC CTCGGGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTCATGGGCGTGATGGCCGACCTCGCCGGCAAGCC CGCGGAACCTCTGGCGCCTGTGGCCGACCGCAAGTTTCTTGAAGTGGACGTCGACAACTTCGACTCGCGCCTCAAGGCCATGCAGCCACGCGTCGCGTTC CACGTGCCCAACGAGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATGGACGACTTCAGCCCCGCTGCCGTGGCACGCAAGGTCG ACTCGCTGAACAAGCTGCTCGAAGCCCGCACGCAGCTGGCCAACCTGCTGACCTACATGGACGGCAAGACCGGCGCTGAAGAAATCATCATGAAAGCGAT
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MDVPLLLAAVSATSPCGEDLEYDADYLHLERAAQGQPERSMGDSILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSALALQGIAGLADALTLINALL REYWADLHPRLDADEDNDPTVRINALSGVASDANIRLLREAILTRSRTFGPVSLRAALNASGLQSFPGESLGAEQLNGAFLDSDAEQLQATRDALNTART ACDAIEQYVSDQVGSAQGVDLGPLKQLLKQAVQILNQYAPHSGAASEPEVVSDDNAPSVEYAAAPVAARPTGDIASRDEVLRSLDKILAYYTRHEPSSPL PVLLNRAKNLVHADFAAIVRNLIPDGMSQFENLRGPDSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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