Pseudomonas sp. PAMC 26793, D109_RS0109790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCCCCAAGGAATACCCGCAATACCAGCACGACGACCTGGCCCTGAGCTTCACCCCGGTGATGCAGGCCCTGCGCGAGGCGCTGTCGATGCTGATCGA CAGCAAGGCCACGCCGATCCCGATTGTCGAGAAAGCCTACGGCATACACGTGGCGATGCTGGCCGACAAAACCCTGATCGACAGCGCCAGTTTCATCCTG GTGGTGCGCGCCGATGTGCCGGGAGAAACCCTGCGCGCGCATTTCGGCCAGCAAAGCAAAGTCGGCTCGGTGGAGCACATCCGCGACATGGTCAACCTGC AACTGCCGGGCATCGGCCTGCTGCCGCTGCCGGTGGCGCCACGGCAGATTCCGTACCACGCAGGCAGCACCTATTACGAGCTGGACCGGGGCAGCGAGCA CTGGCAGCAACTGAGTAATTCCGGTGGCTTTGCGTTCCACATCGCCGGCCAGTTCCCGGGGTTGAACCTGGCTTTCTGGGCCATCCGAGGGTAATCCGCG
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| DNA Sequence for Gene |
>D109_RS0109790
ATGCATCCGAATGATGATGACCGCACCCAGTTCATGCCGCGCCCGGGTGGCCGCGCACCGGAGCCGGTTCGCGCAGAACCGGCGCCGCTGTCGATGCCTG CCGCGCCGATCCTGACCGGCAAGGCCCAAGGCCTGAACCCCCTGGAAAGCGCCGCCGGCCCGTTGCTGTCGCTGCTGACGCGCCTGCGTAATACGATTGC CCACCCGGCGCCGTCGAGCCTGCGCGCGCAGTTGCTGGCCTACTTGCGCCAGTTCGAAGAGCGTGCCGAGGCCGCCGGCGTAGCCCGCAATGACGTGCTG TTGGCGCGTTACGCGCTGTGCACCGCCCTCGATGAAGCCGTGCTGAGTACGCCGTGGGGCAGTGCCAGTGACTGGGGCAAACAGAGCTTGCTGATCACCG TGCACAACGAAGCCTGGGGTGGCGAAAAGGTCTTCCAGTTGCTGGATCACTGCCTGCAAAGCCCGCGGGAACGCCTGTACCTGCTGGAGCTGTTGTACCT GTGCCTGTGCCTGGGTTTCGAAGGTCGCTACCGTGTGATGAACGACGGCCGCAGCCAGCTGGAAGCCTTGCGCGAGCGCACCGCTGCGGCCATTCGCAGT GCCCGTGGCGAGCATGAGCGCGAACTGTCGCCCCATTGGCGTGGCGTCACCGTGGCCCGTGATCGCCTGGCGCAGTTCATGCCGCCGTGGATCGCCGTGG CCATCGGCGTGGCGCTGTTGCTGGCATTGCTGTTCGGGTTGCGGATGAAACTGGCGTCGGATGCCGAGCCGGTGTTCAAGAATATTCATGCCCTGGGCGA GATCCCGGTGCAGGCCATCGACCGCCCGGTCGCCCAGCCAAAAATCATTGAGCGACCGCGTCTGGCGGGCTTCCTGGTGGAAGACATCAAGGCCGGCCGC GTGGCTGTGGAAGATGCGGTCGACCGTTCCGTGGTGACCATCCGTGGCGATGAACTGTTCGCCTCGGCCAGCTCCAGCATCGTCGATGACTTCCAGCCAC TGATGCTGCGCATTGCCGACGCCATCCGCAAGGTCAAGGGCCAGGTGCGGGTCACCGGCCACAGCGATAACCGTCCGATTGCGACCCTGCGGTTCCCGTC CAACTGGGCGCTGTCCGAGGCGCGGGCCAAATCGGTGCTGGAGATTCTCGCGGCCAAGACCGGCCAGCCGGAACGCTTCAGTGCCGAGGGCCGCAGCGAC ACTGAGCCGGTGGCGACCAATGCCACTGCCGAAGGCCGTGCGCGCAATCGCCGGGTAGAAATCACCGTATTGGCGGAGGGGGTCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCGTTTTTCAGTTTTGTGATTCGCTGGGTGATCCCGTTGCTGGGCCTGATCGCCTTGAGCCTGATCATCTGGTTTGTGGGGCCGTTGCTCGATGTGCT GGTGCCGGAAGGGCGCCGCTGGGCGCTGATCATCCTGGTGTTCGCGGTGTGGATTGCCTACCGCGTGTTCCGTATTATCCAGGCTCGTCGCCAGGCCGCC GAAGTGATGCGCAGCCTCGCCGCAGAAACACCGCCAGACCCGGCCAGCGTCGCTACCGCCGAAGAGCTGGCGACCCTGCGCCAGCGCATGGACGAAGCCC TGGCCCTGTTGAAAAAGGCCAAGCTGGGCGGTGACGAGCGCCGCAACCTGTATGAGCTGCCGTGGTACGTGATCATCGGCCCGCCGGGTTCGGGCAAGAC CACCGCGCTGGTCAATTCCGGGCTGCACTTTCCCTTGGCCGCGCAGTTGGGCGCCGGTGCGGTGCGGGGCGTGGGCGGTACGCGCAATTGCGATTGGTGG
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| Amino Acid Sequence |
>type VI secretion protein
MHPNDDDRTQFMPRPGGRAPEPVRAEPAPLSMPAAPILTGKAQGLNPLESAAGPLLSLLTRLRNTIAHPAPSSLRAQLLAYLRQFEERAEAAGVARNDVL LARYALCTALDEAVLSTPWGSASDWGKQSLLITVHNEAWGGEKVFQLLDHCLQSPRERLYLLELLYLCLCLGFEGRYRVMNDGRSQLEALRERTAAAIRS ARGEHERELSPHWRGVTVARDRLAQFMPPWIAVAIGVALLLALLFGLRMKLASDAEPVFKNIHALGEIPVQAIDRPVAQPKIIERPRLAGFLVEDIKAGR VAVEDAVDRSVVTIRGDELFASASSSIVDDFQPLMLRIADAIRKVKGQVRVTGHSDNRPIATLRFPSNWALSEARAKSVLEILAAKTGQPERFSAEGRSD TEPVATNATAEGRARNRRVEITVLAEGVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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