Pseudomonas sp. PAMC 26793, D109_RS0108320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCCTTGGGTTTACCTTGGCTTGCGGCAGCGGCCAGGTGCTGGCCGAGTTGATTGACCGGCAGACCACTTCCATTGATATGCAGGGCTTCGCGCCCCGT GCCGCTTGAGGATATTTCGATGAGCATCACCCGAATCAACAGCAACAGTCGTCTGTCTGGCGCCGTGGTGTTTCAGGACCTGGTGTTTTTGTCCGGCCAG GTGCCGGGGGACGGGCGCGATGTGACGACCCAGACCGAGGAAGTGTTGGCCAAGATTGATGCGCTGCTGGCGGAGGCCGGCAGCGACAAGGATCATCTGC TGAATGCGACCATCTACCTGAACAATATTCAGGAGGGTTTTGCGCCGATGAATGAAGTCTGGTCCGCCTGGTTGTCGCCGGGGCAGGCACCGACGCGTAC CACGTTGCAGGCGCAGTTGGCGCGACCGGATGTGCTGGTCGAGATCAGTGTCATTGCGGTGCGCCGTACCTGAACCTTTAAACACCAACGGAGAATAACA
|
|
| DNA Sequence for Gene |
>D109_RS0108320
ATGCAAAAAATCACGTTGATCGGTTGCACCCTGGGGCTTTTATTGGGTGCTCAGGCCCACGCCAACGAGGCACCCCTGGAAGGCACGCTGAGCAAGATCG CCAACGCCAAGAGCATCACCCTCGGCTACCGCGATGCCTCGGTGCCGTTTTCCTATGTGGGGGATCACAGCGGCAAGCCCATGGGCTATTCGGTGGAGCT GGCGAACAAGATCGTCGAGCGCATCCAGCAGAAAACCGGCGTGCCGAAGCTCAACGTGAAGTACAACCTGGTGACTTCCCAGACCCGCATTGCTCTGGTG CAAAACGGCACCGTGGACCTGGAATGCGGTTCCACCGGTGTGACGGCCGAGCGGCAGAAACAGGTGGCGTTTTCCTACGGGTTTATCTATGTGAAGGGCC AGTTGCTGACCGCCAACGACAGCGGCATCAAAAGCTTCGCCGACCTGCAGGGCAAGAACGTGGTAACCACCGCCGGTACCACCAACGAGCGGTTTCTCAA GAGCTACAACGTTGATCACAAACTGAACATGTCGGTGATCAGCGCCAAGGACCATGGCGAAGCCTTCCAGATGCTGCAATCGGGCCGGGCGGCGGCGTTC TACATGGACGACGCATTGCTCTACGGCGAGCGTGCCAAGGCCAAGGACCCGCACAAGTGGGTGGTGGTGGGGGAGGAGCAGTCGCGGGAAATCTACAGCT GCATGGTGCGCAAGGACGACCCGCAGTTTCTCGCGGTGGTCAACGAAACCCTGGCCGGGCTGTACAGCTCGGGGGAGATCAACGGGATTTACCAGCGCTG GTTTGAGCAGCCGATTCCGCCCAAGGGCTTGAACCTGGAATTCCCGATGACCAGTGAGTTGAAGGCGATTATTGCGACGCCTGTGAGTGACCCGGTGGAG TAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGAGTGGAAACCCGATCAAAATGTGGGAGCTGGCTTGCCAGCTCCCACATTTGATTGGGTTTGCAAGGCAGGGTTTAGAAGTCGCCCCAGAGTTGTTGG GCTACGGCCAGCGCCACAACTGGCGCGGTTTCGGTACGCAGTACGCGTGGGCCCAGGCGTGCAGAATGAAAACCTGCACCTTGTGCCGTCTCGACTTCGC CATCGGTCAAGCCGCCTTCCGGCCCGATCAGGAAGGCCAGGCTTCCCGGCTTGGCGTGGCTCACCAGCGGCTCGGCTACCGGGTGCAGCACCAGTTTCAA GTCCGCCTCTGCCTGTTTCAGCCAATCCGCCAACAGCAGCGGTGGGTGAATCACCGGCACCCGCGAGCGACCGCACTGCTCGCACGCGCTGATCGCCACC TGGCGCCAGTGCTGCAGGCGTTTGTCGGCGCGTTCGTCCTTGAGGCGCACTTCGCAGCGGTCGCTGAAGATCGGGGTGATTTCATTTACCCCCAGCTCGG
|
|
| Amino Acid Sequence |
>ABC transporter
MQKITLIGCTLGLLLGAQAHANEAPLEGTLSKIANAKSITLGYRDASVPFSYVGDHSGKPMGYSVELANKIVERIQQKTGVPKLNVKYNLVTSQTRIALV QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTANDSGIKSFADLQGKNVVTTAGTTNERFLKSYNVDHKLNMSVISAKDHGEAFQMLQSGRAAAF YMDDALLYGERAKAKDPHKWVVVGEEQSREIYSCMVRKDDPQFLAVVNETLAGLYSSGEINGIYQRWFEQPIPPKGLNLEFPMTSELKAIIATPVSDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|