Pseudomonas sp. PAMC 26793, D109_RS0108090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCGACGAAATGACCATCGTCCGTGAAGAGATCTTCGGCCCGGTGATGAGCATCCTCACCTACGACACCGAAGAAGAAGTGATCCGCCGCGCCAACGA CACCGACTTCGGCCTGGCCGCTGGCCTGGTGACCAAGGACCTGAACCGCGCCCACCGCGTGATTCATCAGCTGGAAGCCGGTATCTGCTGGATCAACGCC TGGGGCGAGTCCGACGCGAAGATGCCGGTTGGCGGCTACAAGCAATCGGGCGTGGGCCGTGAAAACGGGATCAGCTCGCTGAACAACTTCACTCGCATCA AATCGGTACAGGTTGAACTGGGCGACTACGCCTCGGTGTTCTAACCCCTGGGTTTTGTATTGCCCGCGAGGCCGCCATCGCGGGCAAGCCCGGCTCCCAC AGTTGACCGTGTGAACCCGGTCAACTGTGGGAGCTGGCTTGCCTGCGATGAGTGCGAAGCACTCGCCTGACCTGACCATATCTAAATGAGGGTGCATTTA
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| DNA Sequence for Gene |
>D109_RS0108090
ATGTCCCAAGAATACGACTACATCATTGTGGGTGCCGGCTCCGCCGGTAACACCCTGGCGACCCGTCTGACCGAAGACGAAGGCGTCACCGTCCTGCTGC TGGAAGCCGGCGGCCCGGACTACCGTCTCGATTTCCGTACCCAGATGCCCGCCGCCCTGGCGTTCCCGCTGCAAGGCCGCCGCTACAACTGGGCCTACGA AACCGATCCAGAACCACACATGGACGGCCGCCGGATGGAATGCGGTCGCGGCAAAGGCCTCGGCGGCTCCTCGCTGATCAACGGCATGTGCTACATCCGC GGCAACGCGATGGACTACGACAACTGGTCGAAACTGCCGGGCCTGGAAGACTGGACCTACCTGGACTGCCTGCCGTATTTCCGTAAAGCCGAAACCCGCG ACATCGGCCCGAACGACTACCACGGTGGCGACGGCCCGGTCAGCGTGACCACGCCAAAAGCCGGCAACAACCCGCTGTTCCACGCGATGGTTGAAGCCGG TGTACAGGCCGGCTATCCGCGCACTGAAGACTTGAACGGCTACCAGCAGGAAGGCTTCGGCCCGATGGACCGTACCGTGACGCCGAACGGTCGTCGCGCC AGCACCGCTCGCGGTTACCTGGACACGGCCAAGAAGCGCTCGACGCTGACCATCGTCACCCACGCCCTGACCGACAAAGTCCTGTTCGAAGGCAAGCGTG CCGTCGGCGTGCGCTACCTGATCGGCGCTGCGGAAGAACGTGTTGAAGCCCGTGCCCGCAAGGAAGTCCTGGTGTGCAGCGGCGCAATCGCTTCGCCGCA ACTGCTGCAACGCTCCGGCGTTGGCCCGGCCAAACTGCTGGAAAGCCTCGACATCCCGGTGGTCCACGACCTGCCAGGCGTCGGCGAAAACCTGCAGGAT CACCTTGAGCTGTACCTGCAATACGCCTGCACCCAACCGGTCTCGCTGTACCCGTCGCTGCTCTGGTACAACCAGCCGGCCATTGGTGCCGAGTGGCTGT TCAACGGCACCGGCATCGGCGCCAGCAACCAGTTCGAAGCGGGCGGTTTCATCCGTACCCGTGAAGACTTCGATTGGCCGAACATCCAGTACCACTTCCT GCCGGTAGCGATTAACTACAACGGCAGCAACGGTGTGAAAGAGCACGGTTTCCAGGCGCACATGGGCTCCATGCGTTCGCCGAGCCGCGGTCGCGTGCAG TTGAAGTCGAAGAACCCACGGGAATACCCGAGCATCCTCTTCAACTACATGTCTACCGAGCAGGACTGGCAGGAATTCCGCGACGGCATCCGCCTGACCC GTGAAATCATGCAACAGCCGGCACTCGATCAATACCGTGGCCGCGAAATCAGCCCGGGCATCGACGTACAGACCGACGAGCAACTGGATAAATTTATCCG TGAGCACGCCGAGACCGCGTTCCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGAGATGGCCGTGGTTGATGCCGAAGGCCGTGTGCATGGCATGCAG GGGCTGCGCGTGGTTGACGCCTCGATCATGCCGATCATCACCACCGGCAACCTGAACGCGCCGACGATCATGATCGCCGAGAAAATCGCCGACAAGATCC GTGGCCGCCAGCCACTGCCGCGCAGCACTGCGGATTACTACGTAGCAGGCGATGCGCCGGTGCGTGGCAAGCCGATGCGTGAAGTAGGTCCTACTGCGCA GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGATAACACTGTGGCGAGGGAGCTTGCTCCAGCTGGGCTGCGTAGCAGCCCCAAAGTCTTGGGAGCGCTTCGCACTCCAGCGGGAGCAAGCTCCCTCGC CACAGGTAATCAGCTTTCCTTGATCAGCTCCCCGCCTCAGGCCTAATCTGTTCGCCTGCCCGCGCCGCGCCGCCCACAAGGAAGGCCCCATGTTCGAACA CCACGCCACACTCAAAAAGCAGTTCAGTGCCCTGCGCACCAACGCCGAATTCTTCTCCCTGCGCTATGTCCGCGAGTCCGGCCAGTACCTGTCGGTACGC AAGAACGTCGCCGAGCCGCCACACCTGAGCCAGGACGAAGGCGCGATGCTTACCGTGCGCCTCAATGGCGTCGAAGCCTATGCCGCCACCCACGACATTT CCCTGCCCGGCCTGCAAGCCGCCCTTGAGCGCGCCGAACAGCAAGCCCGGTTGATCAAGCCCCACGCCCTGCTCGACCTGCGCGACCAGCCGGTGTCCAG
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIR GNAMDYDNWSKLPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRA STARGYLDTAKKRSTLTIVTHALTDKVLFEGKRAVGVRYLIGAAEERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREDFDWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVQ LKSKNPREYPSILFNYMSTEQDWQEFRDGIRLTREIMQQPALDQYRGREISPGIDVQTDEQLDKFIREHAETAFHPSCSCKMGTDEMAVVDAEGRVHGMQ GLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRQPLPRSTADYYVAGDAPVRGKPMREVGPTAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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