Pseudomonas sp. PAMC 26793, D109_RS0107810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PAMC 26793 ctg7180000039298, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACATCGCCCCGCTGCTGTGCCCTGATGCCAACATCCGCGAAGCGGGGCTGGATGACTGGATCACGCATTTCAAACTGCAAGTGGGCGAGCGTCACCACGC CAGTGCAGATGCGTTGGCGACGGCGGAGTTGATGTTGATTTTGTTCAGCCGCGCACGGCAGCAGCAGATCGACAGCCCGCGCGCGTTACAACAGCGCCTG GGCCAATGGAAACGCCGCAAGCAAGCACCCTCATTCTAATGGTGGCGAGGGCGCTTGCTCCCGCTGGGGTGCGAAGCGCCCCCAAAATCAGCCAACCCAT TTCCAACTGAATAAATGCACTGCCTGGATTACGACTGCTGCGCAGCCGAGCGGGAGCAAGCTCCCTCGCCACAGTAAGCGGCATCATCATGATAGATATC ATTACGCCGCCGCCCGACCAACGCCAATTGCACCCGTACGACGCCTCTGCCACAATCGCGAATAATTCTCGTTAGTTTAAACTTCCCGATCGGTGTCGCC
DNA Sequence for Gene
>D109_RS0107810
TTGTCGTCCATGCAAAGTCCCCACAGTGAGCTTGTTGGCGCGTTATACCGCGACCATCGCAGCTGGCTGTTGGCGTGGCTGCGACGCAATGTGGCCTGCC CCAGCCGTGCCGAAGACCTGAGCCAGGACACCTTCATGCGCCTGCTCGGCCGTGAAGAACTGCGTGAGCCCCGCGAGCCGCGGGCATTTCTCGTGGCCAT TGCCAAGGGCCTGCTGTTCGACTACTTCCGCCGCGCCGCCCTGGAACAGGCTTACCTCACCGAGCTGATGCTGATCCCGGAAAGCGAACACCCGTCTCCT GAAGAGCAGCAACTGATCCTCGAAGACCTCAAGGCCATCGACCGCCTGCTGGGCAAACTCTCGAGCAAAGCCCGCGCGGCCTTCCTCCATAGCCGCCTCG ATGGCATGGGCCACGCCGAAATCGCCCAGCGTCTTGGGGTTTCCGTGCCTCGGGTACGGCAATACCTGGCCCAAGGCATTCGCCAGTGCTACATCGCCCT GTATGGCGAGCCCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCGATCAGTTCCAAGCCGGTCTCGGCACGGGTGCTTGACGCCGCCATTGCCTGGCAACTGTCCCTCGATTCGGGCGACGGCAACGCCGTGGAACAGGA AGAGTTCGCCAAATGGCTGGCCAGCAATGAAGAACACGCCCGGGCCTGGCGCCAACTGGGCATGCTCGATCAGCGTTTCAGCGTGGCCTCGGGCCCGGCC CGTGCAGCGTTGCTGCAATCGCGCGAAGGCATTCGCAAGCGCGTGCGCAAGCTCGGCAGCGGCCTGGCCAGTGTGGTGCTGGTGTGCGGTCTGGTGCTCT TCGCCGGCCAGCGCTACGTGCCGCTCAACTATTGGCTGGCCGACCAGCGCACCGCCACCGGCGAACAGCGCACCCTGAAGCTGGCGGACGGTACGGTGAT CAACCTCAATACCCACAGCGCCATCGACGTGCGCTTCGACGAGAAACGCCGGCTGATCGTGTTGCAGGAAGGCGAGATCCTCGTCGAGACCGGCCACAAC
Amino Acid Sequence
>RNA polymerase sigma factor
MSSMQSPHSELVGALYRDHRSWLLAWLRRNVACPSRAEDLSQDTFMRLLGREELREPREPRAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPESEHPSP EEQQLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGEPL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site