Pseudomonas sp. PAMC 26793, D109_RS0106910
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039296, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTTGCTGGTGTTCGGCGTGCAATTGGCTGAAGCCTTGAAAGTGGCCGAGAAGATCGACGCCACGGTGGTGGACATGCGCTTCGTCAAACCACTGGATG AGGCATTGGCACGCGAGATCGCCGGTAGCCATGAGCTGCTGGTGACCCTCGAAGAAAACGCCATCATGGGCGGTGCCGGGGCGGCGGTCAGTGAGTTTCT GGCGCGGGAGAACATCCTCAAGTCGGTGCTGCACCTGGGCTTGCCGGATGTGTATGTCGAGCATGCCAAACCGGCGCAGATGCTGGCCGAGTGCGGGCTG GATGAGGCGGGTATTGAAGCTTCGGTTCGTCAGCGCATGGCCCTGCTGGACCTGTAGAAACGCGATTAAAAAATGTGGGAGCGGGCTTGCTCGCGAAGGC GCAGTGTCAGTCAATACATCTGTTGACTGACCCACCGCTTTCGCGAGCAAGCCCGCTCCCACATTTGTTTTATGCCCACTTCAAATGCTACGGACAGCCC
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| DNA Sequence for Gene |
>D109_RS0106910
ATGATCCGCCTTCGCCTCGCCCTGCCCCTTCTGTTACTGCCAGCCACCGATCTGCTCGCCGACAGCTTCGAACGCGACGACGCCCTCAAGCTGCCCGACG TGGTAATCAGCGCCAACCGCCAGGTCCAGGCGCGCAACGACAGCAGCGCCGCCAACACCATCTTTACCCGCGACGACATCGACCGCCTGCAACCCACCAG CGTGACCGACCTGCTGAGCCGCGTGCCCGGCGTACAGGTTTCACAAGCCGGTGGCCGTGGCAGCCTGGCGAGCGTTTACATTCGTGGCACCAAATCGGCC CAAAGCCTGGTGTTGGTCGATGGCCAGCGCATTGGCAACTCGACTTCCGGCGACAGCAACCTGCAGCACCTGAACATCCAACAGATCGAACGGGTGGAAG TGCTGCGCGGTTCGCGCTCGGTGATCTACGGCAGCGATGCGATTGGCGGGGTGATCCAGATTTTCACCCGGCATGGTAACGAGTCCGGCCTGCAACCCCG CCTGCATGTGGGATTTGGCAGCAACCAGACGTGGGAACGCAGCTTGGGCCTGTCCGGCGGTGACGAGAAAACCCGCTTCAACCTCGGCGCCAGCCTGGAT GACACCGCCGGGATCAATCGCACGTATGTCTCGTACCCCAGCGACCGCGACCATGACGCCTATCGCAACCAGTCCACCAGTTTCAGCCTGAGCCATGCCT TCAACGAAGACCTCGAAGCCGGCGTGAACGTGCTGGATAATCGTGGCAAAAGCGAATTCGACAACTCGTTCTCCCCGCAAAAGCCCTATTCCAACTTCAC CGTAAGCAGCGTCAGCAGCTATGTCGACGCGCGTATCAATGACGCCTGGAAGTCCCGGCTGGAAGCGGGCCACAGCGAGAACCGCGAGGAAACCCGGGAC AAGCTCAGCACCGAACGCAGCGTGTTCAACACCTATCGTAACTCGCTGAACTGGCAAAACGACCTAACCCTCAATGAGCAGAACAGCCTGATCCTGGGCG GCGACTGGTACGAGGACCAGGTCAACAGCAGCGCCCAGCTCAATGAGGACAGTCGCTGGAACCGCGCCGCGTTTATCCAGCACCGTTTCCAGGCGCAATC TTTTTCCACAGAGCTGGGCCTGCGCCGCGACCAGAACCAACAGTTCGGCGGCCACAACAGCTGGAGCGGCACTTTCACCCTGCCGCTGAACCCGGACAAT GATCTGTTGCTGAGCTATAGCGAAGGCTTTCGGGCGCCAACGTTCAACGACCTCTATTATCCAGACTACAACGCCCAAAAAAGCAGCAATCCAAACCTCA AGCCCGAAACCTCGAAAAGCTACGAAGTACAGTGGCGAAGCCAACTCAACGACACGAGCCGACTGGAAGCCTCGCTATATAGGACCGACCTGAAGGACGC GATCGTAATCGACAGCAACGTCCCGCAAAACGTCAGCTCGGCGCGCATCAACGGCTTCGAAGCGGCGCTCAAGCAAGAGCTGTTCGGCTGGCAAAGCAGC CTCGGCATTGCGCTGATCGACCCACGGGACCGCGACACCGGGCGCACACTGGCCCGTCGAGCCAGGCGCACCCTGAGCCTGGACCTGGATCGCCAATTCG ACCGGTTCGGCGTCGGCGCCAGCTGGCAAGCGGTGAGCAGCAGCTACGACGATGCGGCGAACCAGCAACGCCTGGGCGGGTACGGTTTACTCGGGCTACG GGGCAGTTGGGCGGTGAATCGTGAGATCACACTGGAAATGAAGCTCGATAACCTGCTGAACAAAGCCTACAGCCGGGCGCTGTATCAGTATCAAGGCCAG CAATATGGCTATCGGGAAGAAGGCCGGGCGCTGATGTTCGGAGTGACCTGGACACCAGAACTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGTCTGCACCGGCCTCATCGCGGGCAAGCCCGGCTCCCACATTTAACCGCGTCGCATGCATGAACGCGGTCAAATGTGGGAGCTGGCTTGCCTGCGAT AGCGCTCTCACAGCCCCGGTGCAATCACCTGACACAACCGCGCCACCGCTTCCAGCATCTGCCCGCTGGGCCGTTCCAGGCCCTTGTCGGGCACCACCAG CAAATGCCCGGCAGCCACCGCCGCCACCTGTGGCCAAGCCTTCCAGGCATCCAGCTGCGATTGATCGCCCGCCAGAATCACCTCGGGATTACGCTGCAGC ACCGACTCAATGCTGACCTGCGGAGCCGGCAGCTTGAGGTCATCAAACACATTGCGCGCGCCGCACACACTCAGCGCATCGCTGATGATCTGCCCGCCCC CAACGGTGTACAGCGGCTGGTTCCACACCTGATAAAACACCCGCAACGGCTCGACCCGGTGATAGCGCAAGCGCAACTCGGCCAAGCGCTGACGTAACTG
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| Amino Acid Sequence |
>B12 family TonB-dependent receptor
MIRLRLALPLLLLPATDLLADSFERDDALKLPDVVISANRQVQARNDSSAANTIFTRDDIDRLQPTSVTDLLSRVPGVQVSQAGGRGSLASVYIRGTKSA QSLVLVDGQRIGNSTSGDSNLQHLNIQQIERVEVLRGSRSVIYGSDAIGGVIQIFTRHGNESGLQPRLHVGFGSNQTWERSLGLSGGDEKTRFNLGASLD DTAGINRTYVSYPSDRDHDAYRNQSTSFSLSHAFNEDLEAGVNVLDNRGKSEFDNSFSPQKPYSNFTVSSVSSYVDARINDAWKSRLEAGHSENREETRD KLSTERSVFNTYRNSLNWQNDLTLNEQNSLILGGDWYEDQVNSSAQLNEDSRWNRAAFIQHRFQAQSFSTELGLRRDQNQQFGGHNSWSGTFTLPLNPDN DLLLSYSEGFRAPTFNDLYYPDYNAQKSSNPNLKPETSKSYEVQWRSQLNDTSRLEASLYRTDLKDAIVIDSNVPQNVSSARINGFEAALKQELFGWQSS LGIALIDPRDRDTGRTLARRARRTLSLDLDRQFDRFGVGASWQAVSSSYDDAANQQRLGGYGLLGLRGSWAVNREITLEMKLDNLLNKAYSRALYQYQGQ QYGYREEGRALMFGVTWTPEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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