Pseudomonas sp. PAMC 26793, D109_RS0103110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 26793 ctg7180000039290, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAATGGTGAGGCCCAGGTTCAGGTACAGCGCGGCGATGTCGACCTGAGTAACACCTTTGACGATGCGCGGGTACGCCTGAGCGCCGGTGAAAGTATCCGC ATCGGCCCCAAGGGTTTCGGCCAACCGGCCAAGCTGGACACCACCAAGGACCTGGCATGGGTCGACGGTCGGTTGATCTTCGAAAACTGCCCGATGAGCG AAGTGCTGGCCGAATTGCGTCGCTACTACCCCGGCTGGATCGTCAACAACAACGACAAGCTCGCCAGCGTGGCGGTCACCGGCAATTACCGCCTGGACCA GCCTCTCGACGTGGTGCGCTCACTGGCCCACATCACTTCCGCCAAGCTCTCGGAATACCCGGCGCTGGTGATCCTGAACTAAATGAGAATTATTTTTACT CGATAGCCAGCGACGGTTCGTCTCGTTATAGCCAATGCAACTGATTCCTATTTGATTCAGTGTCGCAACTATAAGATTCGTACCTTCCGGAGCGCTCTCG
|
|
| DNA Sequence for Gene |
>D109_RS0103110
ATGTCGTCTCGTTTCAACCGCCGGTCCTCTTCGCCCGTTCGCCGCCACGGCGTGTCCCTGCTGACAGCCGCAATCCTGTTGGCCGGTGCGCCCGTCATGG CCGCCACCGCCGCCGAGCCTGCCACCCGCAGCCAGGGCACTTACAGCTTCAGCATCGAGCAGCAATCCCTGGTCTCGGCGCTGAACGCCTTCACCGCGGT GACCGGCTGGCAAGTCGGCCTGCCCGCCGAACTGGGCCAGGGTGTGTCGTCCCCTGGCGTACGCGGCGCGTTGCCGGCAGATAAAGCCCTGGACCGGCTG TTGGTGGGGACCAACCTCGGCTATCGCAAACTGAGCAACAACAACATCGTCCTGGAAAAACGCGCCGCCGGCAGCGCTATCACCCTGCAACAAATGACCA TCAGTGCCACCCGCCAGGAACAGGCCGTAGACAGCGTGCCCAGTACCGTGACGGTGCATGATCGCGAAGAACTGGACCGCCAGAACGTCAACACCATCCG CGAACTGGTGCGCTATGAGCCAGGTGTGTCGGTGGGGGGTGCCGGGACCCGCTCCGGGAACGCCGGCTACAACATTCGCGGCATCGACGGTGACCGCATC CTGACCCAGGTGGACGGCGTCGAAGTCCCGGACAACTTCTTCAACGGCCCCTACGCCAAGACTCGCCGCAACTACGTCGACCCGGAAATCGTCAAGCGCG TGGAAATCCTCCGCGGCCCGGCCTCGGCGTTGTACGGCAGCAGCGCCATCGGCGGCGCCGTAAGCTATTTCACCCTCGACCCGGACGACATCATCAAGCC TGGCCAGGACTACGGCGCCCGCCTGAAGACCGGCTACAGCTCCGCCGACGAGAGCTGGTTGACCTCCGGCACCGTCGCCGGTCGCGTACAGGACTTCGAT GGCTTGCTGCACCTGAGCCAGCGCAACGGCCATGAAATGGAGTCCTACGACGGTAATAACGCCACCGGCCTGGCCCGCACCGGCGCCAACCCGGAAGATG CGCGCACCACTAACATCCTGGCCAAGCTGGGCTGGAATTATGGTGAGGAGAATCGCCTGGGCCTGACCTACGAGAAGTTCAAGGATGATCGCGACACCAA CTTGAAAAACGCGGTGGGCGGCCCGTTCGTCGGTGGCCAGGGCTTCAACTTCTACCGCGGCCGTACGGGCAACGACACCATCACTCGCGAGCGTTTCGGC ATCGAAAACACGTTCGCCCTTGACTCGCCGATTGCCGATCACATCAAGACCAGCCTCAACTACCAGATCGCCAAGACCGACCAGACCACCGCAGAGATCT ACCAGCCATCGCGCAAGGTGTTGCGCACCCGTGACACCCTCTACGAAGAGAAACAGTGGGTATTCGACGCGCAGCTGGACAAGGCTTTCAGCCTCGGCGA AACCGATCACGTAGTGACCTACGGCACCACCCTCAAACAACAGAAAGTCACCGGTTCCCGTGAAGGTTCCGCGACCTGCCTGGCGGTTGGCAGCGGTTGC ACCGCCATCGGCGCACCCAGCCCGTCGGCCGCCGACAGCGTGAAAAAGGCCAGCGACTTCCCGGATCCGACCATCAACTCCTACGCGCTGTTTGCCCAGG ACCAGATTGCCTGGGACAAGTGGACCTTCCTGCCCAGCGTGCGTTACGACTACATCCAGCTCAAACCCAAGCTGACTCAGGAATTCCTCAACACCGTTGA CCCGACACGCATCTACGACCACAGCAATTCGGAAAAGAACTGGCACCGTGTAACGCCAAAATTCGGCGTAACTTACGCACTGACCGAGCACTACACCTGG TTCGGCCAATACGCCGAAGGCTATCGCACACCGTCGGCCAAGGCCTTGTATGGCCGCTTTGAAAACCTGCAACAGGGCTACACCGTCGAACCCAACCCGG ACCTCAAGCCGGAAAGCAGCCGGGGTGTCGAAACCGGAATTCGCGGCAACTTCGACTCAGGCTCGTTTGACGTGGCGGTGTACTACAACAAGTACCGTGA TTTCATCAACGAAGATGCCTCGGTCGCCGGTGGCACAGTCCAGCAGTTCGAAGCCAACAACATCAAGCACGCCACCATCAAGGGCGTGGAAGCCAAGGGC CGCTTGAACCTCGACGCATTTGGCGCACCGCTTGGCCTGTACACCAAAGGCTCGATTGCCTACACCTACGGGCGCAATGACGACAACGGCGAACCGCTGA ACAGCGTCAACCCGCTCAAGGGCGTATTCGGCCTGGGTTACGACCAGCAGAACTACGGTGCCCTGGTCAGCTGGACCCTGGTCAAGAAACAGAATCGCGT CGACAGCACCACCTTCTTCGCCCCCGACGGCAACAGCGCCAACGGCCCGTTCAAGACCCCGGGCTTCGGCATCGTGGACCTGACCGGCTTCTACAAGGTC ACCAACGACGTGACCATCAACGGTGGCCTGTACAACCTGACCGACAAGAAATACTGGGACTGGGACGACGTTCGCAGCTACGACAGCGTCGGCGAAGCCG GTGTGACCGGCCCGGCCAACCTGGACCGCCTGACCCAACCGGGCCGCAACTTTGCGATCAACCTGATCTGGGACATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCAATGGAGCCTCCCCCGCCGGATTTTATCTTCGGCGGGGTGAGGATTTTTTACTGTGACGCGTCTTCTGGTTCGTCTAGTTCATAACAGCCTGGCAACC AGACGCTTTCTCTTCTCAAGGACTCCCCGATGACCGCCTCTCCTAACGCAGAACGTGCCGCCCTGCGCTCCCAGCGCCTGAACCAGATCACCAACGAGCC GCACACCAAGCTCGACGCGCTGGTAAAGGCCCATGCACCGTTTGAAACCCAGGCCAACTTCGCCCGCTTCGTGGTTGCGCAGTACCTGTTCCAATCGGAG CTGGTGGCGCTGTACAACGATGCCGAGCTGATCAAGATCGTCCCCGACCTGGCCGAGCGCTGCCGTGCCGAAGCGGCCAAGCTGGACCTGGGCGACCTGG ACACCGAAGTACCGGCACCGGTCGCAGGCGCGGTGAAAAACCCGAGCAAGGCCGAAGCCCTGGGCTGGCTGTTCGTGTCTGAAGGCTCCAAGCTGGGCGC
|
|
| Amino Acid Sequence |
>TonB-denpendent receptor
MSSRFNRRSSSPVRRHGVSLLTAAILLAGAPVMAATAAEPATRSQGTYSFSIEQQSLVSALNAFTAVTGWQVGLPAELGQGVSSPGVRGALPADKALDRL LVGTNLGYRKLSNNNIVLEKRAAGSAITLQQMTISATRQEQAVDSVPSTVTVHDREELDRQNVNTIRELVRYEPGVSVGGAGTRSGNAGYNIRGIDGDRI LTQVDGVEVPDNFFNGPYAKTRRNYVDPEIVKRVEILRGPASALYGSSAIGGAVSYFTLDPDDIIKPGQDYGARLKTGYSSADESWLTSGTVAGRVQDFD GLLHLSQRNGHEMESYDGNNATGLARTGANPEDARTTNILAKLGWNYGEENRLGLTYEKFKDDRDTNLKNAVGGPFVGGQGFNFYRGRTGNDTITRERFG IENTFALDSPIADHIKTSLNYQIAKTDQTTAEIYQPSRKVLRTRDTLYEEKQWVFDAQLDKAFSLGETDHVVTYGTTLKQQKVTGSREGSATCLAVGSGC TAIGAPSPSAADSVKKASDFPDPTINSYALFAQDQIAWDKWTFLPSVRYDYIQLKPKLTQEFLNTVDPTRIYDHSNSEKNWHRVTPKFGVTYALTEHYTW FGQYAEGYRTPSAKALYGRFENLQQGYTVEPNPDLKPESSRGVETGIRGNFDSGSFDVAVYYNKYRDFINEDASVAGGTVQQFEANNIKHATIKGVEAKG RLNLDAFGAPLGLYTKGSIAYTYGRNDDNGEPLNSVNPLKGVFGLGYDQQNYGALVSWTLVKKQNRVDSTTFFAPDGNSANGPFKTPGFGIVDLTGFYKV TNDVTINGGLYNLTDKKYWDWDDVRSYDSVGEAGVTGPANLDRLTQPGRNFAINLIWDI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|