Pseudomonas putida S610, EDP1_1006
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1923, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCGACCTGGCGACCGGCCAGCAACAGACCCACCGCTACGATGCCGTCATCCTCGCCACCGGCTACGAGCGCCGCTCGCACCGCGACTTGCTGGCCCCG CTGGCTGGCTACCTCGAAGACTTCAACGTCGATCGCAACTACCGCGTACTGACCAGCCCCGACCTCAAGGCATCGGTGTACCTGCAAGGCTTCTGTGAGA ACAGCCATGGCTTGAGCGACACGCTGCTGTCAGTTCTGCCTTCGCGGGCCGCCGAGATTGGCCGTGCGCTCTACCAGGACCTTCCATCGTTGCGCACCCT GCCACTGCCAGAAGCGGTCCTGTCCCGCGCCTGACAGACGCTTCCCCACCGGCCCCCAGTTTCAGGTGCGGGGGCCGGCTCCTCAGCCTGAAACATTTCC TTGCATTTAAATCGACGGAATTTCGATTCTCATTCGTCCTTATCAATACAGCTCTCCAGGGTTGGGCTTAAGCTCGACCCCTTATTGTGAAGATCGTCTG
|
|
| DNA Sequence for Gene |
>EDP1_1006
ATGGCCAAAACTCCGAAGAAATCCAAGTCCAGGCTCTGGTTCCTGGTCCACAGCTGGCTCGCGCTGCCGATCTGGTTCTTTGTCCTCATCGTCTGTTTCA CCGGCATGCTCGCGGTGGTCAGCCAGGAGATCGTATGGCTGGCCGACCCTGCGGTGCGCGCCAACAAGCCCGATGCCGACGCGGACCGCCTGAGTTTCCA GCAAGTGCTCGATGCGCTGCACAAGGCCGAGCCCGACATGATCGTGGACATGCTTCGCCAGCCTGACGGCTCTCACTTCGCGGTCGTTGCCAACGTGACC CTGCCCGACGGCACCAGCCCCACGCTGTATGTAAACCCTTACACAGGGGCCATCCAGGGCAAGACGCCCGACTTCGACTTCGAAGCCTTCACCCGTGCCT TGCATGGGTGGTGGCTGGTGCCATTCACCAACGGTTACAGCTGGGGCTGGTACCTTGTTTCACTGCTGGGCCTGCCCATGCTGGCGTCTCTGGTCACAGG GCTGGTGGTATACAAGAAATTCTGGAGAGGGTTCTTCAAGCCGGTGCGCACCGCTCACGGCTCGCGGATTTTCTGGGGGGACGTGCACCGCCTGGCGGGC GTCTGGTCCATCTGGTTCATTGCCGTCATTTCCATCACCGGTACCTGGTTCCTGATCCAGGCCATTCTAGGCGATAACCACGTCACGATTTCCACACGGC CCATCGTGCCGGTCATTGCACGCGAAGACGTACCGCAGACCACCGACGGCACCCCGGCACCACGCATCGACCTGGACGAAGCCGTGCGCATTGCCGGGCA AGCGGTGCCCGGCCTTGAGGTCAGCTTCGTGATATTGCCCGCCACGGCGTACAGCCATATCAGCCTTTCGGGGCCGGGGTGGTATCCGCTGATGTTCCAG AATGCCTCGGTCAACCCCTACACGCGCCAGGTCGACAGCCAGTTCCGAATCAGCGACCGCACGCCCCTGGAGTTCGTCACCGAATCCATGCGCCCGCTGC ACACCGGGGACTTCGGCGGGTTGCCGATCAAGCTGGTGTGGTTCTTCTTCGGCCTGGTGTTGACCTTGATGGTGTTCAGCGGCCTGCTCATCTGGACCAA GCGCACCGCCCAGGCCACCGCCGCCGCCCTCAAGCGCAGCGAGCGCGCACCTCGCGTCGCACAGCGCGAGCCTACCCTGGAGACCCAACCATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCAGGCACACACCCTAGCGCAACGCCCATTGAAGCAGTTCTGGTTGAAGTGGCGGTTTCATTTGAACATTTTGCTGATCCTGATCCCGCTGGGCTTCAT GCCCCAGTACTTTGCCGATGCCAAGCTGTTTCGCGGCGAAGCCGGGCTGGGCGCGAACGTCATACGTGATATCAAGGTAGGGCCCTACAGCCTGGACCTG GCTGAAATGCGTGACGAAGTGCCCCAGGCCGATGGACCGGCCGGCTACTTCAAGGTGTTCAACGCCTCGCTCTGCAAAGGCTGCGCCCAAGAAGTGAAAG CCACCTACCTGCGCATCGGCAAGCCGCGCAGCCTGCGCGCCGCCGGCACCATTTTCTTCGGGGCGCCCTACCACATGGGTACCTCCCTTCCGATTGCGCC GCGTACTCGACCAGATGCCCAGGTGTGGATCACCGTTGAGGGCTGGGACGGCAGCATGCATCAAGCCTTGGTGCCCTTGGCCCAGGCATCGCCAGCCACC
|
|
| Amino Acid Sequence |
>peptidase propeptide and YPEB domain protein
MAKTPKKSKSRLWFLVHSWLALPIWFFVLIVCFTGMLAVVSQEIVWLADPAVRANKPDADADRLSFQQVLDALHKAEPDMIVDMLRQPDGSHFAVVANVT LPDGTSPTLYVNPYTGAIQGKTPDFDFEAFTRALHGWWLVPFTNGYSWGWYLVSLLGLPMLASLVTGLVVYKKFWRGFFKPVRTAHGSRIFWGDVHRLAG VWSIWFIAVISITGTWFLIQAILGDNHVTISTRPIVPVIAREDVPQTTDGTPAPRIDLDEAVRIAGQAVPGLEVSFVILPATAYSHISLSGPGWYPLMFQ NASVNPYTRQVDSQFRISDRTPLEFVTESMRPLHTGDFGGLPIKLVWFFFGLVLTLMVFSGLLIWTKRTAQATAAALKRSERAPRVAQREPTLETQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|