Pseudomonas putida S610, EDP1_2121
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1913, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTGTGGGTGTTGCTGATCTACTTTGGCACCGTGGGCCTGATGAACGCCCTGGGCGAAGCCCTGCACATGCCAGGCCTTGAGCTCAGCGCCTTTGCCG CTGGCGTCATTGCCCTGGGCCTGTGTTTTGGCGCCTACGCCACCGAGGTGTTCCGGGGCGCCATCCTGGCCATCCCCAAAGGCCACCGCGAAGCCGGGCT GGCACTGGGCATGTCCAAGGGCCGCATCCTGTCGCGGATCATCCTGCCGCAGATGTGGCGCATCGCCCTGCCCGGCCTGGGCAACCTGTTCATGATCCTG ATGAAGGACACCGCGCTGGTGTCGGTGATCGGCCTTGAAGAAATCATGCGCCATGCCCAGATCGGCGTGACCGTGACCAAGGAGCCGTTCACCTTCTACA TGGTGGCGGCCTGCATCTACCTGAGCCTGACCGTCATTGCCATGACCGGCATGCATTTCCTGGAACAACGCGCCGCTCGCGGCTTCGCGAGGGCCGAACA
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| DNA Sequence for Gene |
>EDP1_2121
ATGAACTGGGAAGTGATCATCAAGTGGCTGCCACGCCTGGCCCAGGGCGCCACCCTGACGCTTGAGCTGGTGGCCATCGCGGTGGTGGCCGGCTTGATCC TGGCCATCCCGCTGGGTATCGCCCGCTCTTCGCGGCACTGGTACGTGCGCGCCGTGCCGTTCAGTTACATCTTCTTCTTCCGTGGCACCCCGCTGCTGGT GCAGCTGTTTCTGGTGTACTACGGCCTGGCCCAGTTCGACGCCGTGCGCGCCAGCGCGCTATGGCCGTACTTGCGCGACCCGTTCTGGTGCACCGTGCTG ACCATGACCCTGCACACCGCCGCCTATATCGCCGAAATCCTGCGCGGCGCCTTGCAGTCCATTCCCAAGGGCGAGATCGAGGCTGCGCGGGCGCTGGGCA TGTCCCGGGCCAAGACGCTGGTCTACATCATGCTGCCCCGGGCTGCCCGCATCGGCCTGCCGGCCTACAGCAACGAAGTGATCCTGATGCTCAAGGCCAG CGCACTGGCCAGTACGGTCACCCTGCTGGAACTGACCGGCATGGCGCGAACCATCATTGCCCGCACGTACTTGCCGGTGGAGATCTTCTTCGCCGCTGGC CTGTTCTACCTGCTGATCTCGTTCATGCTGGTGCAGGGCTTCAAGCTGCTGGAGCGCTGGTTGCGCGTGGACGCCTGCCAAGGGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGTTACCGGCTGCAGCCGGTTGGCCCGTTTTTATCCGACATGTGTATGCCCGGATGAAAGCGGGTTCAGCCGGCTGCAAGGCCTGACCACCCTTTATC GACAGCGCTCCCAATGCCTACCTCTCTCCACAGCCACCTTTTGCTCGAACGCTTTCAGGCGCTTGACCGGTTTTTGACCGAGCATCAGGCGCTGTGGAAA CCCAGACCGTTCACCCATCTGCACCTGGATTGGGAAAGCACCTACCCGGAACTTGCGCGGCATCTGCGCCAAAGCAGCCTGGCCGAGGCCGAAGGTGACG TCGACCCACACGCACTGCCCGCACCTTATCCACAGTTGGCTGATGCCGCCCAGGCCCTCAGCGCGCTGGGTACCCTGCCCACCTGTGCGCTCCCCGCCGC CGCTCATCGGCTTGACGTCAATGTACCCGGCCGCAAATGGCAGCAGATCGAAGCCTTCGCCAGTCACCTCGCCTTCCGCGCACCCTCGCGCCACTGGCTG
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| Amino Acid Sequence |
>amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein
MNWEVIIKWLPRLAQGATLTLELVAIAVVAGLILAIPLGIARSSRHWYVRAVPFSYIFFFRGTPLLVQLFLVYYGLAQFDAVRASALWPYLRDPFWCTVL TMTLHTAAYIAEILRGALQSIPKGEIEAARALGMSRAKTLVYIMLPRAARIGLPAYSNEVILMLKASALASTVTLLELTGMARTIIARTYLPVEIFFAAG LFYLLISFMLVQGFKLLERWLRVDACQGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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