Pseudomonas putida S610, EDP1_3240 (rfbB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1891, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCTTAGGTACTCATGGGCCATACTGGCAGCCTAGTTCAAGTATAAGCGCCATTTACACTCATGCCATATCTCCCGACATGCACTCTTAGGTACAGTAA AATGCTTCTAGATCACCAATAATCTAATCAGTAGCTGATTATCCGCTTCCTGCTTCGCGGTATGCGTTCCACACCTAAATACATCAACCCGCACTATCAG TGATACCACAGCATTTACCAGCATAATTTGAATAGCATCATTTTACAGCGATCTCGATCTTTAACACCTCATCACCATTGCTCGCTAAATATGACCTTAT AACAGGTATACGTCTCAAATCGACTACAATTTCCTGATAGCTATTACATCGAAACTGAGCGATACCTAGCCATCACTGCTGGCGGTGCTGTATCCTGAGC GGCATTAATGACACAGATGTAGATGATTCGCTCGCTGAGCGATTCGAAAGACCTTAGCTGTCAGTGTTAGTAGACGCCAACTTAAATTCAGGCCTAACTC
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| DNA Sequence for Gene |
>EDP1_3240
|rfbB
ATGATTCTAGTAACAGGCGGAGCCGGCTTCATCGGGTCAAATTACGTTCTGCAGTGGTGCGCGCACCATGAGGAACCCGTCCTCAACCTCGACGCCCTCA CCTACGCAGGCAACCTAGCCAATTTGCAGTCCCTTGAAGGCAACACACAGCACCACTTCGTCCAAGGCGACATCTGCGACGCGTCGCTATTGGCCAAGCT GTTCGCCGAGCACCGCCCCCGCGCCGTGGTCCATTTTGCAGCCGAATCTCACGTAGACCGCTCTATTAGCGGGCCTGAGGCATTCGTCCAGACCAACGTC ATGGGCACCTTTAGACTTCTGGAAGCCGCACGTGCGCACTGGAGCAGTCTGACCGGGCAGGAGAAAGAAGGTTTCCGCTTCCTCCACGTCTCAACAGATG AGGTGTACGGCACACTCGCGCCCAACGATCCGGCGTTCACTGAAACCACACCCTACGCCCCCAACAGCCCCTACTCTGCTAGCAAAGCCGCCAGTGACCA CCTGGTGCGTTCCTACTTCCATACCTACGGTATGCCCGTCCTCACTACCAACTGCTCCAACAACTACGGGCCGTTCCACTTCCCCGAAAAACTGATCCCG CTCATGATCGTCAACGCGCTCGCGGGTAAACCGTTGCCGGTCTACGGTGACGGCCAGCAGATTCGGGACTGGTTGTACGTCGAGGACCACTGCTCCGGTA TCCGTCGTGTGCTGGAAGCCGGCACCACAGGCGAAACCTACAACATCGGTGGCTGGAACGAGAAAGCCAACATCGATATCGTGCGTACCGTCTGCGGCCT GCTCGATGAGCTGGCGCCAGCGTCCGCGCGCAATGTGATCAACCAAAAGACCGGTGCGCCTGTCGGACACTACGCCGAGCTGATCACCTACGTGACAGAC CGCCCGGGCCACGACCGCCGTTACGCCATCGATGCACGCAAGATAGAGCGCGAGCTAGGCTGGAAACCTGCGGAAACGTTCGACACCGGCATCCGCAAAA CTGTCGCTTGGTATCTTGCCAATCAGGAATGGGTGCAGGGCGTGATGGACGGTTCGTACCGTGATTGGGTGGCTAAGCAATACGGGGCAAATGAAGCGTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATCCTGTTGTTGGGAAAAAACGGGCAAGTAGGCTGGGAGCTGCAGCGGTCACTTTCGCCGCTCGGTGAAGTTGTCGCACTGGATCGTCAGGGTGACGG CGAGCTCTGTGGGGATTTGAGCCAGTTGGATGCGTTGGCGAGCACAGTTCGTTCGCTCGCGCCTGATGTAATCGTCAACGCGGCCGCTTATACAGCCGTG GACAAAGCAGAGGGTGACCCTCAGGCAGCAGCGCTTATCAATGCTCAGGCCCCTGCCATACTGGCCCGTGAGGCCGCCCGCTTGGGCGCTTGGCTGATTC ATTATTCTACTGACTACGTGTATGACGGCAGCGGTGATCAGCCCCGGCAAGAAACCGCAGCCACCGGCCCGCTATCGGTCTATGGCCGTACCAAGCTTGA GGGTGAGCAGGCCATAGAAGCCAGCGGTGCCAAGGCCGTGATCCTGCGCACCAGCTGGGTGTACGCTGCCCGCGGAAATAACTTTGCAAAGACCATGCTG
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MILVTGGAGFIGSNYVLQWCAHHEEPVLNLDALTYAGNLANLQSLEGNTQHHFVQGDICDASLLAKLFAEHRPRAVVHFAAESHVDRSISGPEAFVQTNV MGTFRLLEAARAHWSSLTGQEKEGFRFLHVSTDEVYGTLAPNDPAFTETTPYAPNSPYSASKAASDHLVRSYFHTYGMPVLTTNCSNNYGPFHFPEKLIP LMIVNALAGKPLPVYGDGQQIRDWLYVEDHCSGIRRVLEAGTTGETYNIGGWNEKANIDIVRTVCGLLDELAPASARNVINQKTGAPVGHYAELITYVTD RPGHDRRYAIDARKIERELGWKPAETFDTGIRKTVAWYLANQEWVQGVMDGSYRDWVAKQYGANEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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