Pseudomonas putida S610, EDP1_3239 (rfbD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1891, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTCATGATCGTCAACGCGCTCGCGGGTAAACCGTTGCCGGTCTACGGTGACGGCCAGCAGATTCGGGACTGGTTGTACGTCGAGGACCACTGCTCCG GTATCCGTCGTGTGCTGGAAGCCGGCACCACAGGCGAAACCTACAACATCGGTGGCTGGAACGAGAAAGCCAACATCGATATCGTGCGTACCGTCTGCGG CCTGCTCGATGAGCTGGCGCCAGCGTCCGCGCGCAATGTGATCAACCAAAAGACCGGTGCGCCTGTCGGACACTACGCCGAGCTGATCACCTACGTGACA GACCGCCCGGGCCACGACCGCCGTTACGCCATCGATGCACGCAAGATAGAGCGCGAGCTAGGCTGGAAACCTGCGGAAACGTTCGACACCGGCATCCGCA AAACTGTCGCTTGGTATCTTGCCAATCAGGAATGGGTGCAGGGCGTGATGGACGGTTCGTACCGTGATTGGGTGGCTAAGCAATACGGGGCAAATGAAGC
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| DNA Sequence for Gene |
>EDP1_3239
|rfbD
GTGAAAATCCTGTTGTTGGGAAAAAACGGGCAAGTAGGCTGGGAGCTGCAGCGGTCACTTTCGCCGCTCGGTGAAGTTGTCGCACTGGATCGTCAGGGTG ACGGCGAGCTCTGTGGGGATTTGAGCCAGTTGGATGCGTTGGCGAGCACAGTTCGTTCGCTCGCGCCTGATGTAATCGTCAACGCGGCCGCTTATACAGC CGTGGACAAAGCAGAGGGTGACCCTCAGGCAGCAGCGCTTATCAATGCTCAGGCCCCTGCCATACTGGCCCGTGAGGCCGCCCGCTTGGGCGCTTGGCTG ATTCATTATTCTACTGACTACGTGTATGACGGCAGCGGTGATCAGCCCCGGCAAGAAACCGCAGCCACCGGCCCGCTATCGGTCTATGGCCGTACCAAGC TTGAGGGTGAGCAGGCCATAGAAGCCAGCGGTGCCAAGGCCGTGATCCTGCGCACCAGCTGGGTGTACGCTGCCCGCGGAAATAACTTTGCAAAGACCAT GCTGCGCCTTGCCCAGGAGCGGGACGCTTTGAGCGTGGTGGCTGACCAGTTCGGCGCCCCGACGGGTGCTGACCTGATCGCGGACGTTACAGCCCATGTC GTCCGCCAGGTGGTCCACCAGCCCGCGAACGACCACCTTGCCGGGATCTACCACCTGGCAGCATCGGGTGAAACGTGCTGGCACGCGTACGCGCAATTAG TGCTGCAGGACGCGCTTTGCAGGGGTATATCGCTTAAAGTGAACGCTGATCAAGTATCAGCGATCAATACCGACGCTTACCCTGTACCCGCGCCGCGCCC GCGAAATTCGCGGCTGGCACTGGGCAAGCTCGAAAGCGCGTTTAAGTTGAAAATGCCGCCCTGGCAGCAAGGCGTTAAACGTATGCTAGACGAAATCCAT AAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGATTCCCATGGCTCGTAAAGGAATTATTCTGGCCGGCGGCTCAGGCACACGCCTGCACCCCGCGACGCTCTCGGTATCGAAGCAGCTGCTGCCGGTGTA TGACAAACCCATGATCTATTACCCGCTGAGCACCCTGCTGCTCGCCGGTATCCGCGACATCCTGATCATTTCAACGCCGCAGGACACCCCACGCTTCGAG CAACTGCTGGGCGACGGCAGCCAGTGGGGTCTGAACCTGTCCTACGCCGTGCAGCCAAGCCCTGATGGCTTGGCTCAGGCATTCACCATCGGCGAGGCCT TCATTGGCAACGACACTTCTGCGCTGGTGCTGGGCGACAATATCTTCTATGGCCACGACTTCCAGTCGCTGTTGTTGAACGCGGGCCAACGCGAAACGGG CGCCTCTGTGTTCGCTTATCACGTCAACGACCCTGAGCGTTACGGTGTAGCCGAATTCAATGAGGCCGGGCGCGTATTGTCGCTGGAAGAAAAGCCACAA
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MKILLLGKNGQVGWELQRSLSPLGEVVALDRQGDGELCGDLSQLDALASTVRSLAPDVIVNAAAYTAVDKAEGDPQAAALINAQAPAILAREAARLGAWL IHYSTDYVYDGSGDQPRQETAATGPLSVYGRTKLEGEQAIEASGAKAVILRTSWVYAARGNNFAKTMLRLAQERDALSVVADQFGAPTGADLIADVTAHV VRQVVHQPANDHLAGIYHLAASGETCWHAYAQLVLQDALCRGISLKVNADQVSAINTDAYPVPAPRPRNSRLALGKLESAFKLKMPPWQQGVKRMLDEIH K
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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