Pseudomonas putida S610, EDP1_4110 (lapD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1864, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACTGAGCTTGAGCGTCTGCAGGTGGTCAACCGGTTCTTTAACCAACAATTGCGCTACGTCGAGGATATCGATCTGTGGCACGAGGTCGATTACTGGGCA ACACCGGTCCAAGCATTGATAAAAGGGGCTGGCGATTGCGAGGACTACGCTATCGCCAAGTACTTCAGCCTCAGGCGCATGGGCATCCCCAGCGAGAAAC TGCGGATCACCTACGTCAAGGCCTTGCGACAGAACCGGGCGCACATGGTACTGACTTATTATTCGACGCCCCAGGCGCAGCCGTTGGTGCTCGACAGCCT GATGGACGCGATCAAGCCAGCCAGCCAGCGCCCCGACCTGTTGCCCGTCTATGCCTTCAACGGTGAAGGCCTATGGCTGACAGGCGCCGGTGGCAACAAG AAAGTCGGCGACACCAAGCGCTTGTCGCGCTGGCAGGACCTATTGAAAAAAATGCAGGCCGAAGGCTTCCCGGCCGAGCCGGTTTACTGAAGGAGCACAG
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| DNA Sequence for Gene |
>EDP1_4110
|lapD
ATGTCACTGTTCAAACAATTGCTGTTGGCTATTTGCCTGTTCCTGGTAGTGGCGTTCACCGGCAGTTTCATGGTCAGCCTGGAGAGTTCGCGAAGCCAGT ATGTCAACCAGCTCCGCTCGCATGCACAGGATGCAGCCACTGCGCTGGCCCTGTCGCTCACGCCCAATATCGATGACCCTGCCATGGTCGAGCTGATGGT GAGCTCGATCTTCGACAGTGGCTACTACGCCAGTATCAAAGTGGTGGACCTGGCCTCCAATACAGTGCTCGTCGAGCGTCATGCCGAACCAGACCCTGGG GGCGTACCCCGTTGGTTCGTTCACCTGATCGGTCTGGAAGCTGCCGGGGGCGATGCGTTGGTCAGCCGTGGCTGGCAGCAGGCGGCACGCGTCGAAGTCA TCAGTCACCCCATGTTCGCCATTGCCAAGCTCTGGCAGAGCGCGTTGGGCAGCCTGGGCTGGCTACTGCTCTGTGGTGCCGCCAGCGCCATTCTGGGGGC GTTGCTGCTGCGCCGGCAGCTCAAGCCGCTGGACTACATGGTCGAACAGTCCCATGCCATCGCCAGGCGTGAATTCCTGAGCCTGCCTGAACTGCCCCGC ACACCCGAGCTCAGGCGCGTCGTCCAGGCCATGAACCAGATGGTCGAAAAGCTCAAGGCCCTGTTCACCGAGCAGGCCGAGCGCAGCGAGCGGTTACGCG CCGAGTCCTATCAAGACACCTTGACCGGTCTGTCCAACCGTCGCTATTTCGAAATGCAGCTCAATGCTCGGGTCAGCAACCTTGAGGAAGCACGGGCAGG CTACCTGTTGTTACTTCGGGTTCAAGGCCTGGCGGGCCTCAACGCGCGCCTGGGTGGCCAACGCACGGATCAGTTGCTGCAGGCCGTTGGCGAGCAATTG CGCCGCGCCTGTGCGAGCTTCCCGGAAACCAACGACCTGATTTCCCGCAGCCGGGGTGGTGAATTCGCCGTGTTGGCACCTGGCATGGTGCATGAAGAAG CCATACAGCTGGCCCAGGCGCTCGAGGCCACGCTGCAGAGCCTGCATGAGACGGGAGCCACTGATATTCAGCCGGTGGCGTGCATCGGCTTGGCCCCCTT CAGCCCAGGCGACGCTCCTCCAGCATTGCTCAAACTGGCTGATGAGGCCCTGGCCCGCGCGGAGAATCAGCCAACCCCAGGTTGGGTCTGCCTGGAGCAA GGCGTCGCTGCCGTGGCTGCCGACAGTCAGCACGACTGGCATGAGCGTCTCGACCAGGCCTTTACCAACGGCCACTTCGAGCTGTTCTTCCAGCCGGTGG TCGATTGTGCAACCGCCCAGCATGTGCTGCACCACAAGGTGATATCCCGCCTGAAGGATCGTCAAGACGAGGCGCTTCCAGCCGGTCGATTCCTCCCTTG GCTCGAGCGCTTTGGCTGGATGCCAAGGCTGGACCTTCTGGTGCTGCAGAAAGTGCTGGCGCACATGCGTGGCCACGACCAGGTGCTGGCGCTGAACCTC TCCGCCGCTACCTTGGCGGACGCCCAGGCGCTGCAACGCATATTCGAACTGCTCAGCCAGAACGTCGCCCTCGGGCCGCGACTGGTGTTCGAAATCGGTG AAGAGCAGCTACCTGACCAGCCGGCGTTGGAGAAATTGACCCGAAAGCTGCATAGCCTTGGCTTCGGCCTGGCACTGCAACGCTTTGGCGGACGCTTCAG CATGATCGGCAACCTGTCCCACCTCGGGCTGGCTTACCTGAAGATTGATGGCAGCTACATCCGCAACATCGACCATGAACAGCACAAGCGCTTGTTCATC GAGGCGATCCAGCGTGCCGCGCACAGCATCGACCTGCCCCTGGTGGCCGAGCGCGTGGAAACCGAAGGTGAGCGCGCAGTGCTCTGCGAAATGGGTGTAG GAGGCATTCAGGGGCAGCTTGTGGGTGAGCCTGCCCCTTGGGCGCACGATAAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACAGGAATGAGGGCCCGCACGCAAGACCGTGCGGGCTCACCCTCAGCGTTCGCGCAAGGCCTCGGAGCGGGCCTTCATGATGGGCTTGAGCAGATAG CTCATGATGGTCTTCTTGCCGGTCATGATATCGACCGTCGCCACCATCCCGGGAATGATCAGCAGCGGCTTTTCATCGGTGCCCAGATGGCTGCGATCGG TACGCAGCTTGATCAGGTAGTACGTGGTCTTCTTGTCTTCGTCGGTGATGGTATCGGCGCCGATCTGCTCAAGCTTGGCCTTGAGGCCCCCGTAGATGGT GTAGTCGTAAGCGGTGAACTTGACCGTGGCTTCCTGGCCCGGGTGCAGGAAGGCAATGTCCTTCGGCAGGATCTTGGCCTCGATCACCAGCGTGTCGTCC AGTGGCACGACCTCGATGATGTCGCTGCCTGGCTGAATCACGCCGCCGATGGTGTTGACCAGCAGCTGCTTGACGATACCCCGCACAGGCGAGGTCACCA
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| Amino Acid Sequence |
>cyclic dimeric GMP binding protein
MSLFKQLLLAICLFLVVAFTGSFMVSLESSRSQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYASIKVVDLASNTVLVERHAEPDPG GVPRWFVHLIGLEAAGGDALVSRGWQQAARVEVISHPMFAIAKLWQSALGSLGWLLLCGAASAILGALLLRRQLKPLDYMVEQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFTEQAERSERLRAESYQDTLTGLSNRRYFEMQLNARVSNLEEARAGYLLLLRVQGLAGLNARLGGQRTDQLLQAVGEQL RRACASFPETNDLISRSRGGEFAVLAPGMVHEEAIQLAQALEATLQSLHETGATDIQPVACIGLAPFSPGDAPPALLKLADEALARAENQPTPGWVCLEQ GVAAVAADSQHDWHERLDQAFTNGHFELFFQPVVDCATAQHVLHHKVISRLKDRQDEALPAGRFLPWLERFGWMPRLDLLVLQKVLAHMRGHDQVLALNL SAATLADAQALQRIFELLSQNVALGPRLVFEIGEEQLPDQPALEKLTRKLHSLGFGLALQRFGGRFSMIGNLSHLGLAYLKIDGSYIRNIDHEQHKRLFI EAIQRAAHSIDLPLVAERVETEGERAVLCEMGVGGIQGQLVGEPAPWAHDKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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