Pseudomonas putida S610, EDP1_4106
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1864, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGATCTCGTGCAAAACCTCTACAGTGCTCATCATGGCTGGCTGCATACCTGGCTGCGCCACAGGCTTGGAAATGCGGCCGACGCTGCTGACGTAGCCC AGGATACCTTCATGCGGCTGTTGCAACGCCGCGAGCATCTGCAGATACAGCAGCCCAGGGCATTTCTGCGCACGGTGGCGCGCGGGTTGATCATCGACCA CTGGCGTCGAGAGGAACTGCACAAAGCCTATCTGGAAGCGCTGGCGCTGGTGCCGGAGGCTAACACCCCCGATGTGGAGACCCGCGAGCTGCTGCTGGAG TTGCTTGAACGCATTGCCAAGATGCTTGATGGTCTCAAGCCAAAGGTGCGCACGGCTTTCCTGCTGGCCCAATGCGAGGGCCTGCGCCATCAGGAAATTG CACAGCAGATGGGCGTATCGGTGAGAACGGTGGAGCGCTACATTGCTGACGCGCTTTATCACTGCTACCTGCTGCGCTACGAAGCGTAATGACCCCGGTT
|
|
| DNA Sequence for Gene |
>EDP1_4106
ATGCCTAGCCCTCATCCCGACGCCAAGACGGTCAGACAAGCCATCCAGTGGATGCTGAAACTTCGCCACAGTGGTGAGGATCCGGCTTTGAACGAGCGTC TCGCGCAGTGGCGCTCAGAGGCTGCGACTCATGAGTTGGCCTGGCAGCGCGTGCTGCATTTGGAACAGGATTTGGACCTGCGTCACGTGCCCGCTGCGGG GGTTGCGCTGCAGACACTGGAGGCCAGTCATCGGCGCCTTGAGCGGCGACAGGCGTTGAAGCTGCTGGGCACCGTTGCCGTGTTCGGATCGGCAGCATGG CTGAGCAAGGACTTGAGTGTGGTACAGGCCTGGTCATCCGACTACGCGACAGCCACGGGCGAGCGCAGAGACGTGACCTTACCCGACGGCTCTCGGCTAC AACTCAATACCCGAAGTGCCGTGGACGTGGCCTTCAACAGACAGCAATTGTCGATCGACCTCAAGCGGGGGGAGGTCATGCTGGACTGTCGACGGGCGGC TCCTGGACAACCTCCAGTCACGCTGAGCACGAGTACCGCGGCGTTGCAAACCGTCGGGGGGCGCTTCGTGGGGCGTGTCGAGGACGATTGCCTGCGGGTG GTCGTCAGTGAGGGGCGAGTATTCACTCGCAGCCAGAGCACCGGCCTGATCCAATGGCTCGAGCCAGGTGGAGAATGGCGCGTCACCGCCAGCGGTGCCG AGCAGGTGACGCCTTCAGGGATAGACGCGATGGCCTGGACCGAAGGCCTCATCGTAGGCAAGAACATGTTGCTCAGGGATTTCCTGACGCAGATCAGCCG ATACCGCCGCGGTTATCTCACCTGCAGCGATGACATTGCTGAACTCCGTTTGTCCGGGGTATTCCGCCTCCAGGATCCAGAACATCTCCTTCAATTGCTG CCCACCACGCTTCCCGTTCAAGTCCGTCATCTAACGCGATGGTGGGTGCGCGTGGAAGCGCTGGGTCATGCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTTTGGTGAACAAAGTCTGTTCCTAATGTGTCGGGTTTTGGCCGCGCATCCGGCTAGATCAGTGAGAAGAATCTCCTGCACATTTTACGGACCCTTTCA TGTCAACCAACCCGGTAAAACTGTACGCCTTTGGCGCGAATGATTTTCGACCTGTCTTGCACTCAGATTTGCTAAGCAATGCCATCCGCGCTGCCTTGCT GGGTACGGCGCTTGGATTGGCCCTGGTGCCTGGCATGACGCTCGCCGCTGATGTGTCAGTGGTCAGCTCGACTTATGCAATTGCGCCCGGTCCCCTGGAT GAAGTGCTCAATCAATTTGCTCGTCAGGCGGGCATCACGCTTTCCAGTACGCCGGCACTCACGCAAGGCTTGCAGTCCAAAGGCCTTCACGGACAGTACT CGGCTGAGCAGGCGTTAGGGGTGCTGTTGGCAGGAAGCGGCTTGACGGCGTTGGATCAAGGTAACCGGACCTTCATCGTACAGGCTCAGCCAGCGGAAGC
|
|
| Amino Acid Sequence |
>fecR family protein
MPSPHPDAKTVRQAIQWMLKLRHSGEDPALNERLAQWRSEAATHELAWQRVLHLEQDLDLRHVPAAGVALQTLEASHRRLERRQALKLLGTVAVFGSAAW LSKDLSVVQAWSSDYATATGERRDVTLPDGSRLQLNTRSAVDVAFNRQQLSIDLKRGEVMLDCRRAAPGQPPVTLSTSTAALQTVGGRFVGRVEDDCLRV VVSEGRVFTRSQSTGLIQWLEPGGEWRVTASGAEQVTPSGIDAMAWTEGLIVGKNMLLRDFLTQISRYRRGYLTCSDDIAELRLSGVFRLQDPEHLLQLL PTTLPVQVRHLTRWWVRVEALGHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|