Pseudomonas putida S610, EDP1_1770 (hydA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1815, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCCACCCACAGGGCGGTGATATGCCACCTGTTCCAGGTGCGCTGATGCACCTTGGTGGGGGCGATGTCGGGGTTGTAACGCGGGCTGTCGAGCACGTC GGTGCCTTCGCACAGCTCTACCAGGCCGTTGCGCTCGACCTCGTGCGATCTGCTCTGTTGCATGGGGCCTTCTCCAGAATGTTGTTGTAGTTGTTCGCTC ATCGAGGCGAGTCGATGGCCGGAGTACACACGCAGAATGTGGGTAGAAATTTCGACCAAATTTCAATCTTGTCAAGTTCGTCAACATGATTTGAAAAGCC CGTTCTAGAGCCATTTCAAATTTTATTTACTTATTAATCAATAAGTTAAAAACCACAAAATCCGTGTGATTTATTTCTTGCCGAATCCAGGATCTGCATC TAGCCTCGAATCTTGTCAGCACTGACAGGATCAACCTGCCTGGCTGGCCTACACAATTCCAAGAACCGGCACAGACCGGTCAGCCTGCGAGGAAAACGGC
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| DNA Sequence for Gene |
>EDP1_1770
|hydA
ATGTCTCTGTTGATCCGTGGCGCCACCGTGGTCACCCACGAAGAAAGCTTCAGCGCCGATGTCCTGTGTGCGAACGGCCTGATCCAGGCCATCGGCCAGG CCATCGACCCACCGGTCGGTTGCAACGTGCTCGATGGCAGCGGCCAGTACCTGATGCCCGGCGGGATCGACCCGCATACCCACATGCAGTTGCCGTTCAT GGGCACGGTAGCCAGCGAGGACTTTTTCAGCGGCACCGCCGCCGGGCTGGCAGGCGGGACCACCTCCATCATCGATTTCGTGATTCCCAATCCTCAGCAG TCGCTGATGGACGCGTTTCACACCTGGCGCGGTTGGGCAGAAAAGAGCGCCAGCGATTACGGCTTTCACGTGGCCATCACGTGGTGGAGCGACCAGGTGG CCGAGGAGATGGGTGAGCTGGTCGCTCACCATGGGGTGAACAGTTTCAAGCACTTCATGGCCTACAAGAACGCCATCATGGCCGCTGACGACACCCTGGT CGCCAGCTTCGAGCGTTGTCTGCAACTGGGCGCTGTGCCCACGGTGCACGCCGAGAACGGCGAGCTGGTCGATCATCTGCAACGCAAGTTGCTGGCCCAG GGCATGACAGGGCCTGAGGCGCACCCGTTGTCACGCCCACCCCAGGTTGAGGGCGAAGCGGCCAGCCGCGCCATCCGTATTGCCGAAACCCTCGGTACAC CGTTGTACCTGGTGCATGTCTCCAGCCGCGAGGCGCTGGACGAAATTGCTTACGCTCGCGGCAAGGGGCAGCCGGTATACGGCGAGGTCTTGCCTGGCCA CCTGTTGCTGGACGATAGCGTCTACCGCGACCCGGACTGGGCCACGGCAGCGGGCTATGTGATGAGCCCGCCGTTCCGACCGCGTGAACACCAGGAGGCG CTGTGGCGCGGCCTGCAATCGGGCAACCTGCACACCACCGCCACCGACCATTGCTGTTTCTGCGCCGAGCAGAAGGCCATGGGGCGCGACAACTTCAGCC GCATTCCCAATGGCACGGCCGGCATCGAGGACCGCATGGCGGTGTTGTGGGATGCCGGTGTGAACACAGGTCGCCTGTCCATGCACGAATTCGTTGCCGT CACCTCCACCAATACGGCGAAGATCTTCAACCTGTTCCCACGCAAAGGCGCCATCCGCGTTGGCGCCGACGCCGATTTGGTGCTGTGGGACCCCCAGGGC ACACGTACCCTCTCGGCCAAGACCCATCACCAGCAGGTGGACTTCAACATCTTCGAAGGCCGTACCGTGCGCGGCGTGCCCAGCCACACCGTCAGCCAGG GCAAGGTGGTGTGGGCCGACGGTGACTTGCGCGCCGAAGTCGGTGCCGGACGCTATGTCGAACGCCCGGCCTACCCGTCGGTGTACGAACTGCTCGAGCG TCGGGCAGAACACCAGCGCGTCACCCCCGTGCCCCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCTGATCGACCGGCTTTCACTGCAACATCGACACGTCAGGCCAACGCCGTGCCCAGGGCCCGGCGTGCCGGTGATCGGGGCTGCCCGCGCCCTACTTT TCAAGCCCACGACAAGAAAGAGAGGCTACCACCGTGATCGACGCACTGAACCATTTGCCGCGCCCAAGGGCCGGCAGCGACCAGTTGGCCGAGCATTTCA GCGACCTGGTCCCACCCCTGACCGCGCGCCAGGCCGCCGTGGAGAGCGCGCGCTGCCTGTACTGCTACGATGCCCCGTGCATCAACGCCTGCCCCAGCGA CATCGACATCCCGTCCTTCATCCACCGCATCAGTGACGACAACCTGAAAGGCGCTGCCGAACGGATCCTGTCGGCCAACATCCTCGGCGGCAGTTGCGCT CGCGTCTGCCCCACCGAAATCCTTTGCGAACAGGCCTGCGTGCGCAATAACGCACAGGAATGCGCGCCGGTGCTGATTGGTCAATTGCAGCGCTACGCTC
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| Amino Acid Sequence |
>dihydropyrimidinase
MSLLIRGATVVTHEESFSADVLCANGLIQAIGQAIDPPVGCNVLDGSGQYLMPGGIDPHTHMQLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQ SLMDAFHTWRGWAEKSASDYGFHVAITWWSDQVAEEMGELVAHHGVNSFKHFMAYKNAIMAADDTLVASFERCLQLGAVPTVHAENGELVDHLQRKLLAQ GMTGPEAHPLSRPPQVEGEAASRAIRIAETLGTPLYLVHVSSREALDEIAYARGKGQPVYGEVLPGHLLLDDSVYRDPDWATAAGYVMSPPFRPREHQEA LWRGLQSGNLHTTATDHCCFCAEQKAMGRDNFSRIPNGTAGIEDRMAVLWDAGVNTGRLSMHEFVAVTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQG TRTLSAKTHHQQVDFNIFEGRTVRGVPSHTVSQGKVVWADGDLRAEVGAGRYVERPAYPSVYELLERRAEHQRVTPVPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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