Pseudomonas putida S610, EDP1_3522
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1811, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAGCGTTTCGCCAACGACGCTGCCTGATACCGGCCAACGGGTTCTATGAGTGGCGGGGCAGTGTGCGCAAACGGCCCTTCTGGCTGACCCCGGGGGAG GGGGCATCGCTGTATTTCGCCGCGGTATGGGAGGCTTATGCCGTACAGGAGCAGGTCTGGCTCAGCTGCGCCGTGGTCACCCAGGCGGCGATGAACCAAC GCAGGCCCCTGATTCTGGATGAGGCAGGGCAGGCTGCCTGGCTGGACCCGCAAACGCCGCTGATCCGTTTGCAGGAATTGCTGGCCAGCCCCTCGGTGAC GTTGCGCGAGCGGGCGCTGGCGCCTTTCGTGAACGACCCGAAACTGGACGCTCCCGAGTGCCTCACCCCGGCCTGAGTGCTTGTGCATGCTTCGTGGCTT GTCGCGCAGAGGGGAAGGGTGTGCAAAATCTTCCCTGCGGCTATGGCGGCCTACCCATGAGTCATCCTAGGATACGGCGCATGTAAAAAGGAGTGTTTCC
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| DNA Sequence for Gene |
>EDP1_3522
ATGCGTAAGTCTTTTGTCATCAGCCTATTGAGCGCTGGCATCCTGCTCGCCGGCTGCCAAGGGGTGAACACCACCAGCGGCGGTGCAGTGGGCGTTGAGC GCAAGCAGTACATGTTCAGCATGCTGTCGCCGGACGAGGTCAACACGATGTACGCCCAGTCGTACCAGCAGACCCTGGGCGAGGCGTCCAGCAAGGGCTT GCTCGACAAATCCAGTGCCGATGCCAGGCGCGTACAGGCCATTGCCAACCGGTTGATTGCCCAAGCGCCCCAGTTCCGGCCGGACGCTGCGCAGTGGAAA TGGGAAGTCAACGTGATCAAGAGCGATGAGCTCAATGCCAACTGCGGACCAGGCGGCAAGATCATCGTCTACACCGGCCTGATCGATCAGCTCAAGCTCA ACGACGCCGAGATCGCGGCCGTCGTCGGTCACGAAATCGCCCACGCCTTGCGCGAGCACAGCCGTGAAGCCATGTCCAAGGCCTACGGCGTGGAAATGGC CCGCCAGGGGGCCGGCGCCATCTTTGGCCTGGGTCAGGACAGCATGGCGCTGGCCGACACCGTGGTGAATTACGCCATGACCTTGCCCAACAGCCGGGCC AACGAGAACGAAGCAGACCTGATCGGTCTTGAACTCTCGGCACGTGCAGGCTACGACCCGAACGCGGCCATTACCCTGTGGAACAAGATGAGCAAGGCCT CGGAAGGGGCGCCACCGGAGTTCATGAGTACGCACCCGGCCTCGGCCAGCCGTATTGCCGCCTTGCAGGCAGCCATTCCCAAAGTCATGCCACTGTATCA GGCAGCGGCCAAGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCGGCTGCAAGCGGGCAAGCTGGCGCCATGAAGGCGCCGGTCTGCCCGCCGGTGCGTCAACCCACCCAACCGCTGGCCTTCATGGCCGTGTAGACCGC AACGATCGCGAGCACGAAGAACGCGGCGGCCGCCAGGCGGCGAATCAGCGTCAGCGGCAGTTTGTCCGCGGCGAAATTACCCGCCAGCACCACGGGCACG TTGGCGATCAGCATGCCCAGCGTGGTACCGACGATGACCATGATCAGGTGTGGGTACTGCGCAGCCAGCATGACCGTGGCGACCTGGGTCTTGTCGCCGA TCTCGGCAAGGAAGAACGCGATCAGCGTGGTCAGGAACGGCCCGAAGCGGCGCGCAGGGTTTTCGTCGTCGTCCATTTTGTCCGGCACCAGCGTCCACAG GGCCGTGGCGGTGAAGCTGGCGGCCAGGATCCAATGCAGCGCAGCGTCGCTGAAGAAACTGCCAAACCAGGCGCCCACGGCCCCTGCCGCGGCATGGTTG
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| Amino Acid Sequence |
>peptidase M48 family protein
MRKSFVISLLSAGILLAGCQGVNTTSGGAVGVERKQYMFSMLSPDEVNTMYAQSYQQTLGEASSKGLLDKSSADARRVQAIANRLIAQAPQFRPDAAQWK WEVNVIKSDELNANCGPGGKIIVYTGLIDQLKLNDAEIAAVVGHEIAHALREHSREAMSKAYGVEMARQGAGAIFGLGQDSMALADTVVNYAMTLPNSRA NENEADLIGLELSARAGYDPNAAITLWNKMSKASEGAPPEFMSTHPASASRIAALQAAIPKVMPLYQAAAKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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