Pseudomonas putida S610, EDP1_634 (ttgR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1789, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAGGCGCTTGAGGATGATCCCGTTGACCTGCGGACGAACTTCGGCGATCCGGTAGGCATTGGTGCGGCCTGGCAGCTCGGTGGTCAAGGTGAAGGCCTG TGGCTGTAGGGTCACTACGCCGACTTGAGGCGCCTGCTGCTGCTGTTGCTGCTGCGCGGCTTGGTCTTCTTTATTGCAGCCACTGAGCAGGGTTGCGAGG GCTACGGCTGAAACCAGGGCGGTAACGGCTGGCTTGAATTGCATGAGAATCCTCGGATCGCAGGAGCAGGGAGACGCTCAAGAGTAATGGAATGTCTTGA TCTGGATAAATGGCTATCCGGTGGATAAATAGCTTGCTAAGGAATATACTTACATTCATGGTTGTTTGTAAATACCGCCGGGTTGTAGATGGCTACCGCC ACAGCCCTTGATTAGCTTGATCCGCCAGGTGCCCTCAAGAGGTGCCCCGGAGCCTTCCCGTACGCGTCGCCGCGTTCGGGCCAGATGAGGTTGTACTGCC
|
|
| DNA Sequence for Gene |
>EDP1_634
|ttgR
ATGGTCCGTCGAACCAAAGAGGAAGCCCAGGAAACCCGCGCCCAGATCATCCAGGCGGCGGAAAGGGCTTTCTACAAGCGCGGTGTTGCGCGAACCACCC TCGCCGACATCGCCGAGCAGGCGGGCGTCACGCGAGGTGCAATCTACTGGCACTTCAATAACAAGGCCGAACTGGTGCAGGCACTGCTCGACAGCCTGCA TGAAACCCATGACCATCTTGCGCGCGCCAGCGAAAGCGAGGACGAACTCGACCCGCTCGACTGCATGCGCAAATTGCTGCTGCAGGTGTTCAACGACTTG GTGCGCGACGCCAGGACACGTCGTATCAATGAGATTCTGCATCACAAGTGCGAGTTCACTGATGACATGTGCGAAATCCGCCAGCAGCGCCAGGTAGCGG TAGTGGACTGCCACACAGGTATTACCCTGGCCTTGGCCAATGCAGTGCGCCGCGGCCAATTGCCGGTGGAGCTGGATGTGGAGCGGGCAGCGGTGGCCAT GTTTTCATACGTCGACGGGTTGATCAGGCGCTGGCTGTTGCTGCCTGACAGCGTGGACCTGCTGGGCAACGCCGAGAAGTGGGTCGACGCCGGGCTGGAT ATGCTGCGCTTGAGCCCGGCGATGCGCAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACTTTGTGAAGCTTTGTGAGGGCCTGATTCCCAGGGTACGGCTCAGTGACGGGCACCTGAGCCTTTCTGCGTGCCCGCTCAATGCCCGCGCAATGGCCG ATCAGGCAACAACACCGCCACCACCAGTGCAATAACGCCGACCCCTGCGCTGGCCATCAACAGATGCCGAAAGGTGACCGCCAGGTGTGACTGCAGTTCG GGGCTCACCGGGTTGGCCTTGAAGGTGCCCAGCAGCGGATTGTCCAGCAACGCGAATCCGCCTTGGTGCAGCAAGGCCAGCAGCAGGCTCGACATGCAGG CCACGCCCATGGCACCACCGAGGGACCGAAACAGGTTGGTGGTGCTGGTGGCGACACCCATGTCCTGGATCTGCACGGCACTCTGCGTGCCTACCAGTGA CGTCGGGAACTGCATCCCGCACGCTATCCCTGTCAGCAGCATGAACAGTGCACTGGCCAGCCCGGCCTGCGGCGGCGTGATCGCCAGGGCGAAGATAGAC
|
|
| Amino Acid Sequence |
>HTH-type transcriptional regulator ttgR
MVRRTKEEAQETRAQIIQAAERAFYKRGVARTTLADIAEQAGVTRGAIYWHFNNKAELVQALLDSLHETHDHLARASESEDELDPLDCMRKLLLQVFNDL VRDARTRRINEILHHKCEFTDDMCEIRQQRQVAVVDCHTGITLALANAVRRGQLPVELDVERAAVAMFSYVDGLIRRWLLLPDSVDLLGNAEKWVDAGLD MLRLSPAMRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|