Pseudomonas putida S610, EDP1_1981 (cobQ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1753, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCCTTCATGGACAACAGCCCCGCAAACACTGTGATCAAACGTGCCGAATGGCCGGGCTTGATAGTGCTGCGCTCGTTCGGCAAGTTCTTCGGCCTGG CCGGTGTGCGCCTGGGCTTCGTGGCCGCAGAGCACAGCGTGCTGCAGCGCCTGGCCGAATTGCTCGGCCCGTGGACCATCAACGGCCCCAGCCGGGTGCT GGCCCAGGCCAGCCTGACAGACCTGGCCACGCAGCAGCTGCAGCGCCAGCGCTGTGCAGGCGCCAGCGAACGCCTGGCGGCTTTGCTGACCCATGCGGGG CTGGCGCCCGCCGGCGGCTGTGACCTGTTCCAGTACGTGCGGTGCGAGCATGCCGCCCGGTTGCACGATCACCTCGCACGACACGGGGTGCTGGTGCGCC TGTTCGAGCAGCCGGCGGCCCTGCGTTTCGGGTTACCGCCCAGCCAGGCGGACGAACGACGATTGGCCCAGGCCTTGAGCGCCTACCACAAGGACCTGAC
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| DNA Sequence for Gene |
>EDP1_1981
|cobQ
ATGACGACCCTGATGGTGCAAGGCACCACCTCCGATGCCGGCAAGAGCACCCTGGTGACGGCCCTGTGCCGCTGGCTGCTGCGCCAGGGCATCGGCGTGG TGCCGTTCAAGCCGCAGAACATGGCCCTCAACAGCGCCGTGACCGCCGACGGTGGCGAGATCGGCCGGGCCCAGGCGGTGCAGGCCCAGGCCTGTCGCCT GGCGCCGCACACCGACATGAACCCGGTGCTACTCAAACCCAACAGCGACACAGGCGCCCAGGTGATCATCCATGGCCGAGCGGTGACCAGCATGAACGCG GTTGCCTACCATGATTACAAGGCCATCGCCATGCAGGCCGTGCTGGCTTCGCACCAGCGCCTGAGCCAGGGCTGGCCGGTGGTCATGGTGGAGGGCGCAG GGTCGCCGGCCGAGATCAACCTGCGGGCCGGCGACATTGCCAACATGGGATTTGCCGAGGCCGTGGACTGCCCGGTGATTCTGGTCGCGGACATCAACCG CGGGGGGGTGTTCGCCCACCTGGTCGGTACCCTCGAACTGTTGTCGCCCAGTGAACAGGCGCGGGTCAAAGGGTTCGTCATCAACCGGTTCAGGGGCGAC ATCGCCTTGTTGCAACCTGGCCTCGACTGGCTGGAGGCGCGCACCGGCAAACCCGTGCTTGGCGTGCTGCCGTATGTCACCGACCTGCACCTTGAAGCCG AGGACGGCATCGACCGGCGTCAGGGCGAAAAGCAGCAGCGCGTGCTCAAGGTGATCGTGCCGGTGCTGCCACGCATCAGCAACCACACCGATTTCGACCC GCTGCGCCTGCACCCCCAGGTCGACCTGCAGTTCATCGGCCCCGGGCAACCGGTGCCGCCAGCGGACCTGATTATCCTGCCGGGCTCCAAGAGTGTCCGC GGCGACCTGGCGCAATTGCGCGCGCGCGGCTGGGACAAGGCCATCGAACGCCACCTGCGTTATGGCGGCAAGGTGATCGGTATCTGCGGCGGCCTGCAGA TGCTAGGGCGCGAGGTGCACGATCCGTTGGGCCTGGAGGGCGCTGCAGGCTCCAGTCCCGGGCTCGGCCTGCTGGACTACGCCACGGTGCTGGAAGCCGA CAAGCAGTTGCGCAATGTCGCCGGGACCTTGCACCTGGATGCATCGCCCGTGACCGGTTACGAGATCCATGCCGGTGTCACCACTGGCCCTGCGCTGGCG CAACCGGCGATACGCCTGGCCGACGGTCGCTGCGAGGGTGCCATCAGCCCGGACGGCCAGGTGTTGGCCACCTACCTGCACGGGTTGTTCGAGGGCAGCG CCTCCTGCGCGGCCCTGCTGCGCTGGGCTGGGCTTGAAGACGTGCAGCTGATCGACTACGAGGCGTTGCGCGAGCGCGACATCGAACGCCTGGCTGACCT GGTGGACAAGCACCTGGACACCCAGCGCCTGCGCCAATTGTGTGGAGTACCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGTGCGTACGTTCGTGATTGGCGGAGCCCGGTCTGGCAAGAGCCGCCTGGCCGAGCAGCGGGCAGCCGATTGCGGCCTGCCCGTGACCTATATCGCCACC AGTCAGCCGCTGGACGGCGAACTCGATGAGCGGGTGAAGCTGCATCGCCAGCGCCGGCCAGCGGCGTGGGGGTTGATCGAGGAACCCTTGGCCCTGGCCG CCGTACTAGAGGCCGAAGCGGCCGGTGACCGCTGCCTGCTGGTGGACTGCCTGACGCTGTGGCTGACCAACCTGCTGATGCTGGACGACCCGCGCCGGCT GGCCGAGGAGCGTGATGCCCTGTTGGGCTGCCTTGAACACCTGCCCGGTCACATCATTTTGGTCAGTAACGAGACCGGCCTGGGCGTGGTGCCCATGGGC GAGCTGACGCGGCGTTACGTCGACTTAGCCGGTGTCGTGCATCAGGCGGTGGCCGAACGCTGTCAGCAAGTGATCCTCACCGTCGCCGGTCTCCCACTCA
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| Amino Acid Sequence |
>cobyric acid synthase CobQ
MTTLMVQGTTSDAGKSTLVTALCRWLLRQGIGVVPFKPQNMALNSAVTADGGEIGRAQAVQAQACRLAPHTDMNPVLLKPNSDTGAQVIIHGRAVTSMNA VAYHDYKAIAMQAVLASHQRLSQGWPVVMVEGAGSPAEINLRAGDIANMGFAEAVDCPVILVADINRGGVFAHLVGTLELLSPSEQARVKGFVINRFRGD IALLQPGLDWLEARTGKPVLGVLPYVTDLHLEAEDGIDRRQGEKQQRVLKVIVPVLPRISNHTDFDPLRLHPQVDLQFIGPGQPVPPADLIILPGSKSVR GDLAQLRARGWDKAIERHLRYGGKVIGICGGLQMLGREVHDPLGLEGAAGSSPGLGLLDYATVLEADKQLRNVAGTLHLDASPVTGYEIHAGVTTGPALA QPAIRLADGRCEGAISPDGQVLATYLHGLFEGSASCAALLRWAGLEDVQLIDYEALRERDIERLADLVDKHLDTQRLRQLCGVP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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