Strain | Pseudomonas putida S610 EDP1.NODE_1552, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCCTGACCGGTGTGGTTCGCATCACCCGCATGCGTACGTAGTCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCT GCCGCCATCGGCACCTATTCGCAGGCGATCAAGGCCGGTAACACCGTGTACATGTCTGGCCAGATCCCGCTGGACCCCAAGACCATGGAACTGGTCGAAG GCTTCGAGGCCCAGACCGTCCAGGTGTTCGAGAACCTCAAGGCTGTGGCCGAAGCAGCAGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCT GACCGACCTGAGCCATTTCGCCAAGGTCAACGAGGTGATGGGTCGCTACTTCGAGCAGCCTTATCCCGCTCGCGCCGCCATTGGCGTGGCCGCGCTGCCA AAAGGCGCGCAGGTCGAGATGGACGCCATCCTCGTCATCGAGTGATGCCCCAGGCGGCGAGCATTGCCCTCGCCGCTTTCTCTGCTGAAAGGTTCCCGTC
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DNA Sequence for Gene |
>EDP1_206
ATGCGCATAGCTTTGCCTCTCACGCTGGCAGCCCTGGTCCTGGGCGGCTGCGCCAGCCACAAACCTGAAGACTTCAACGGCACCTGGATCAATCAGGACG CCATCACTGCGGCCGTCAAGCAAGGCAACCTTCGCCAGGCCCTGAACGAGCATGGCCCGGTCTTCGAGTGGAAGCTCGATGTTGCCACCCAGCGTGCCAG CTACAGCAATGGGTTCGAGGCCTCGGACGGTCAGCTCAGCGCCAATGACAAGCAGTGGCTGGCCACCTTCGAAGGCGGTGCCACCGAGCAATTGTCGCTG GACGGCGACGAACTGCAAACGGTCGACCAGCAGGGCGGCAAACAGCGCTTCGAGCGCGCCAAGGCGCCCAGTGGCAACAATGCACCACTGGGCAGCAGCT TCGAGCAAGCGCTGTACCAGGCCTACCTCGGCGGTGCCTGGACAATCATGGAGGGCCCAGGCAAGGGCGCCAACGTGACGTTCAGCGACAGCGGCAACGT CACCGGCCTGCCCGGTCCGGATCGCTTCGCCCTGTGCCTGGCCGGTGATTGCGCAACGATGGGCGGCAGTAATGACAGCCTGTGGCTGGAGCGCAACCAG CGCGGGGCGCCATTCATCATCAAGCGCAATGGCAACCAGCTGGAAATCTTCCAGGCGGTAAACCGCGCCCAGCCAGATGAAATGCCCATGCTGGCAGCCG GCAAGCGCCAGTGGCTCCTGCAACACAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCCTACCTACCCAGCCTACGCTCAGGTAGCACGCAGGCTAACTGAGCGTAGGCCAGGCGATCATTGCCCGAGAATTGCGCCGTAGCCTTCCTTGTAGCTG GGGTACTGCGGCGACCAGCCTAGCCCCCGTGCACGGGCATTGCTGCAGCGCTTGCTGCCCGTACGGCGCACGCGCTCTTCATCAGACCACTGCGTGACCC CCAACTGATGACGCAGCCAGGCCACGACTTCGGTCAACGGCGCCGGGCTGTCGTCCACGCCGATGTAGCAATCGTCCAGCGCCTTGCCTTCGCTGTCACA TTGCAACAGGAACGCAAGCAGACTGGCAGCATCGTCCACGTGGATACGGTTGCCATACAAAGGCGGGTGCTCGGCGACGCGATAACCCTGACGAACCTGA CGCAACAGCCACTCGCGGCCTGGCCCATAGATGCCGGTCAGGCGAACCACGCTGGCTGGGACAGCACCGGACACCGCCAGTTGTTCAGCCTCGAGCATGA
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Amino Acid Sequence |
>putative lipoprotein
MRIALPLTLAALVLGGCASHKPEDFNGTWINQDAITAAVKQGNLRQALNEHGPVFEWKLDVATQRASYSNGFEASDGQLSANDKQWLATFEGGATEQLSL DGDELQTVDQQGGKQRFERAKAPSGNNAPLGSSFEQALYQAYLGGAWTIMEGPGKGANVTFSDSGNVTGLPGPDRFALCLAGDCATMGGSNDSLWLERNQ RGAPFIIKRNGNQLEIFQAVNRAQPDEMPMLAAGKRQWLLQHN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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