Pseudomonas putida S610, EDP1_104
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida S610 EDP1.NODE_1552, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACACCGATATCTTCCTGGCCCTGACCAACGATGACGAAGCCAACATCATGTCGTCCCTGCTGGCCAAGCGCCTGGGTGCGCGCAAGGTCATGACGATC ATCAACAACCCGGCCTATGTGGACCTGGTGCAGGGCGGTGAAATCGACATCGCCATCAGCCCGCAATTGGCCACCATCGGTACCTTGCTGGCGCATGTGC GCCGTGGCGATATCGTGAGCGTGCACTCGCTGCGTCGTGGTGCGGCCGAAGCCATCGAGGCTGTGGCCCACGGTGATGCGAAGTCGAGCAAGGTGGTGGG CAAGGCGATCGAGGACATTACCCTGCCCCCGGGGACGACCATCGGTGCCATCATTCGCCACGACGGTGTGCTGATCGCGCATGACACGACAGTTATCGAA TCAGGTGACCATGTGATTCTGTTCGTTGTGGACAAGAAACACATTCGGGATGTGGAGAAGCTGTTCCACGTCGGCCTGAGCTTCTTCTAGGAGGCGGGAC
|
|
| DNA Sequence for Gene |
>EDP1_104
ATGCGCCAATCGTTGGAAAAGATGCTGGCCAAGGGTGTGGATAACCCGTTGTTGCGCTTTGGCCTGGGCAAGGCGTGGCTTGACGAAGGCGATGGCGCCC AGGCTGCCGTGCACCTGGCTCGCTGCGTCGAGCAGGACCCTAAGTACTCGGCAGCCTGGAAGCTGTTGGGCAAGGCCTACCAGTTGCTGGGGGACCTGCC AGCGGCGCGCAAGGCCTGGGAAGATGGCATCGCGGCGGCGCAGGCCCATGGCGACAAGCAGGCCGAGAAAGAGATGACGGTGTTTCTCAAGAAACTCGAC AAACGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTGCGCTGTCGCCGGCAGCCGCTGCCGGCGATGCGCGCCTCAATACCAGCGCGCCTCGCCCGCCGGACGCTTCTTGAAGCGCTTCATGCTCCACATGTAC TGGCTGGGATACTCGCGCACATAGCGCTCGACCACCTTGCTCATCGCGGCCGCCGACTCGTTCACATCGGTGCTGTACATCGCCTCCGGCGCGGCTTCCA GAAACACCTTGAAGCCTGACCCATCAGGCAGGCGCAGGGCATGCAGGAAAACCCCGACTGCCTTGCCGCCGGCGAGCATGTTCGGCACGAACTTGCTGGT CAGCGCTTCAGTGCCCAGGAAGGGAACGAATACACCCGCCGATTCGGCCGGCTCGGGATCGGCCGGGATGCCGACCTGACCACCGCGCCGAACTTCCTTG ATCACGCTGAGGATGCCTTCCTTGGTCGAAGGCGCCACGCGGTTGCCCATCTGCACACGCTGCTCGCGCAGCAGGTCGTCCACCGCCTTGAGCTTGGGGG
|
|
| Amino Acid Sequence |
>tetratricopeptide repeat family protein
MRQSLEKMLAKGVDNPLLRFGLGKAWLDEGDGAQAAVHLARCVEQDPKYSAAWKLLGKAYQLLGDLPAARKAWEDGIAAAQAHGDKQAEKEMTVFLKKLD KR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|