Pseudomonas aeruginosa MRW44.1, A542_RS0118215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa MRW44.1 contig00009, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCTGATGTGGTTTCCCGGCTACCAGGGCCTGGAAACCGCAGCCTTCGTCGGCGACTACTACCTGAGCGGCGATACCGTCGAACTCAACGAAGACGGC AGCATCAGCTTCGTCGGCCGCGCCGACGACGTCATTACCACCTCTGGCTACCGGGTCGGCCCGTTCGATGTGGAGAGCGCGCTGATCGAACACCCGGCAG TGATGGAGGCGGCGGTGATCGGCAAGCCCGACCCGGAGCGCACCGAACTGGTCAAGGCCTTCGTCGTGCTCTGCGCCGGCCACCGGCCGACGCCGGAACT GGCGGACGCATTGCAGCGATACGTGCGCCAGCGCCTGTCGGCGCACGCCTACCCGCGGGAGATCGAGTTCCTCGAGGAACTGCCGAAGACTCCCAGCGGC AAGATCCAGCGCTTTCTCCTGCGCAACCAGGAGATCGCCCGGCAACGCGAGGCGGCCCCACGGGCGGCCGCCGCGAACTGATTCAGCAGGAGAAAACGAC
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| DNA Sequence for Gene |
>A542_RS0118215
GTGCGTATCGAAAATCGAGTGTTCCTGGTTACCGGCGGCAGCTCCGGCCTCGGCGCCGCCACCGCGAAGATGCTGGTGGAGCAGGGTGGCAAGGTGGTGC TGGCCGACATCAACGCCGAGGCCGGCGCGGCCAAGGCCGCCGAGCTTGGCGCCCAGGCGCGCTTCGTCAGGGCCGACATCGCCAGCGAGGCCGACGGCCG CCAGGCCGTGGCCGCTGCACTGGAGGCCTTCGGCGGCCTCCATGGCCTGGCCAATTGCGCGGGCGTGGCGCCGGCCGAGAAGGTCCTCGGACGCAATGGC ATCCATGCCCTGGAGAGTTTCCGCCGGGTCATCGACATCAACCTGGTGGGCAGTTTCAACTTGCTGCGCCTGGCCGCCGAGGCCATGTCCCAGGGCCAGC CGGACGAGGGCGGCGAGCGCGGGGTGATCGTCAATACCGCCTCGGTGGCGGCGTTCGACGGGCAGATCGGCCAGGCCGCCTATTCCGCCTCGAAGAGCGG GGTGGTCGGCATGACCCTGCCCATCGCCCGCGAGCTGGCGCGCTTCGGCATCCGGGTGATGACCATCGCCCCGGGCATCTTCGAGACACCGATGATGGCC GGCATGCCCCAGGAGGTGCGCGACTCCCTCGGCGCCAGCGTGCCGTTCCCGCCGCGCCTGGGGCGTCCGGACGAATACGCCGCGCTGGTCCGGCAGATCA TCGAGAACAGCATGCTCAACGGCGAAGTGATTCGCCTCGATGGCGCCATCCGCATGGCCGCCCGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACAGGAGGAAGATCCCATGACCCGCGAAGATCCGATCGTCATCGTCAGCGCCGTCCGCACCCCGATGGGCGGCTTCCTCGGCGACTTCAAGGACGTCAA CGCCGCTACCCTCGGTGCCGCGGCGGTGCGCGCCGCGGTGGAGCGGGCGCGCCTGCAAGCCGACGAAGTGGACGAGGCCGTGCTCGGCTGCGTGCTCGCC GCCGGCCAGGGCCAGGCGCCGGCGCGCCAGGCGGTGCTTGGCGCCGGACTGGCGCGCGGCACGCCGTGCTCGACGCTGAACAAGATGTGCGGCTCGGGCA TGAAGGCGCTGATGCTCGCCCATGACACGTTGCTCGCCGGCAGCGCCGGGGTCGCGCTGGCCGGGGGCATGGAAAGCATGTCCAACGCGCCCTACCTGCT GGAGCGCGCCCGTAGCGGCTACCGCATGGGCCACGGCAAGGTGCTCGACCACATGTTCCTCGACGGCCTCGAAGACGCCTACGACAAGGGCCGCCTGATG
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| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MRIENRVFLVTGGSSGLGAATAKMLVEQGGKVVLADINAEAGAAKAAELGAQARFVRADIASEADGRQAVAAALEAFGGLHGLANCAGVAPAEKVLGRNG IHALESFRRVIDINLVGSFNLLRLAAEAMSQGQPDEGGERGVIVNTASVAAFDGQIGQAAYSASKSGVVGMTLPIARELARFGIRVMTIAPGIFETPMMA GMPQEVRDSLGASVPFPPRLGRPDEYAALVRQIIENSMLNGEVIRLDGAIRMAAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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