Pseudomonas aeruginosa MRW44.1, A542_RS0111100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa MRW44.1 contig00005, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGTCATCGCCCGCGACGAGAGCGGCTTCAAGGGGCCGGCATTGTTGCAGAACATCCTCGAGAGCGGCCTGCGCTTCGGCGACATGGACATCTTCCATCG CCACGAAAGCATGGCCGGCAATGGCGAGATCCTGTTCTCCATGGCCAATGCGGTGAAACCGGGCACTTTCGACCTGGACGACATCGACAACTTCAGCACC CGCGCCGTGAGCTTCTTCCTCGGCCTGCCGGGGCCGCGCCATCCGAAGCAGGCCTTCGACGTGATGGTTGCCGCCGCGCGCAAGCTGGCCCACGAGCTGA CCGGCGAGCTGAAGGACGAGCAGCGCAGCGTGTTGACCGCCCAGACCATCGAGCACTACCGCCAGCGCATCATCGACCATGAGCGTCGCAGCCTGATGCA GAAGCGCTGATCCGGCCACAGCCCCTTTCTTCGTACGGGAGGGGGCGAACTACTCTATAGAGCAGCCGAGGCTGCTCTTTTCGTTTCACGGACTCCCACC
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| DNA Sequence for Gene |
>A542_RS0111100
ATGACCGACACCCAGGCTGCCGCCGAACGCATCGCGCAACTGCGAACCGAACTGGACACCCACAATTACCGTTACTACGTGCTCGACGAACCGAGCATTC CCGACGCCGAATACGATCGCCTGTTCCGCGAGTTGCAGGCGCTGGAGGCCGAGTACCCGCAACTGCTGACGCCCGACTCGCCGACCCAGCGGGTCAGCGG CACGCCGGCCTCGGCGTTCGGCGAAGTGCGCCATGAGATCCCCATGCTCAGCCTCGGCAACGCCTTCGAGGAGCAGGACCTGCTGGACTTCGACCGCCGC GTACGCGAAGGACTGGCCGACCTGTTGCCTGGCGGCGACCTGCTCGGCGGTGGCGCGGAGGTCGAGTACAGTTGCGAGCCGAAGCTGGACGGCCTGGCCG TCAGCCTGCTCTACGAACGCGGCCAACTGGTGCGCGGCGCCACCCGTGGCGATGGCAGCACCGGCGAGGACATCACCAGCAACGTACGCACCATTCGCAA CGTACCGCTGAAGCTGCACGGCGAAGGCTGGCCGGAGATCCTCGAAGTGCGCGGCGAGGTGTTCATGTCCAAGGCCGGTTTCGAGGCGCTCAACGCCAAG GCCGTGGAAACCGGCGGCAAAACCTTCGCCAACCCGCGCAACGCGGCGGCCGGCAGCCTGCGCCAGCTGGATTCAAAGATCACCGCCAGTCGCCCGCTGG AATTCTGTGCCTACGGCTTCGGCCAGGTCAGCGGGACGCTGCCGGACACCCAGGTGGGCATCCTCGAGGCGTTCCGCGGCTGGGGTATCCCCATCAGTCG CGAGCTGCGCCTGGTCAAGGGCGCCCAGGCCTGCCGCGACTACTACGACGACATCGGTCGCCGACGCGATGCGCTGGCCTACGAGATCGACGGCGTGGTG TTCAAGGTCAACCGCATCGCCTTCCAGCGCGAACTGGGCTTCCGCGCGCGCGAGCCGCGTTGGGCGATCGCCCACAAGTTCCCCGCGCGCGAGGAGTTGA CCGAGCTGCTGGGTGTCGAGTTCCAGGTCGGCCGCACCGGCGCCGTGACCCCGGTGGCACGCCTCAAGCCGGTGCAGGTGGCCGGCGTCACGGTGTCCAA TGCGACCCTGCACAACATGGATGAAGTCGCCCGCCTGGGCCTGCGCATCGGTGATACGGTGGTGATCCGCCGTGCTGGCGATGTGATTCCGCAGGTCATG CAGGTGGTGCTCGAGCGCCGCCCGGCGGATGCGCAGGCTATCGAGGTGCCCGAGCATTGCCCGGTCTGCGGCTCGGCCGTGGAGCGGACCCAGTTGGTCA AGCGCAGCAAGGGCAAGGAGTCGATCAGCGAGGGCGCCATCTATCGCTGCGTCGGCCGCCTCTCCTGTCAGGCGCAGTTGAAGCAGGCGATCATCCATTT CGTATCGCGCCGGGCAATGGATATCGACGGTCTTGGCGACAAGATCGTCGAGCAACTGGTGGATCGCGGGCTGGTCGCCTCGCCGGCGGATCTCTATACC CTGACCTATGAACAGGTGTTCGAGCTGGAAGGGTTCGCCGAGCTGTCCACCAACAACCTGCTGACGGCTATCGCCGATAGCCGCAAGCCTTCGCTGGCGC GCTTCATCTTCGCTCTGGGGATTCCCGACGTCGGCGAGGAAACCGCCAAGCTGCTGGCGCGTTCGCTGGGTTCGCTCGAGCGGATCGGCAAGGCGCTCCC GGAAGTGTTGACCTACCTGCCGGACGTCGGCGCCGAGGTAGCCTACGAGATCCACAACTTCTTCGCCGACGAGCACAACCGCCAGGTGATCGCCCAGTTG CGCGATGCCGAACATGGCGTGCAGTTGCAGGAAGAGGGCGAGGTCGCCGCGGAGTTCGCCGCCTGTGCCTCGCTGGCCGGTTTCATCGACAAGCTGAACA TTCCCTTCATCGCCGCCACCGGCGCGGAAAAGCTGGCTAGCCGCTTCGGTTCGCTCGACGGCATCATCCGTGCCGACTGGCTCGATCTGCGCCAGGTGGA GCGTCTGCCCGAGCGAGCGGCGAAAAGCCTGCGCGATTTCTTCGACGAGCCGGCCAACGTGCAGCGTGCCCTGGCCATCGAGGCGCAGTTGCGTGAGTTC GGCATGCATTGGCAGAGCGAGCGCAAGGCGGTCGAAGGCCTGCCTCTGGCCGGGCAGACCTGGGTGCTGACCGGCACCCTGGAGGCGATGAGCCGGGACG TGGCCAAGGACAAGCTGGAAGGGCTCGGCGCCAAGGTGGCCGGCTCGGTGTCGGCCAAGACCCACTGCGTGGTCGCCGGGCCCGGCGCCGGCTCGAAGCT GGCCAAGGCCAACGAGCTGGGCGTGAAGGTGCTCGACGAAGACGGCCTGCTGAAACTGTTCGACGAGCACGGCGTCGCCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGGCGGCGCTGCTGCGAAAGATTTCCGAAGACTGGAGTTAACGATGGACAAGGCAAGAAAGCAGCGGTTGCTGGGCGTGCTCGCATTGGTGGTGCTGT TCGGCGCCTACGTGGGTTGGAGCGAGCGGCCGCGCATCCTGCTGCATTACAGTGGCCAGGCTTCGGCGCCGATCGCCTACAGCTACAAGGAGCAGGGCGT GGAAACCTTCTCCGGGGAGATCCGGCCCGGCCAGGTCCGCGAGTTTCCGGTGAAGCTGTTCGGCGGCAGCGATTACCGGATCGCCTTCTCCTTCCATCGC GGTGAGGAGAAGTATGCGTCGTTCAGCACCAAGCCGGGCTGGGGCACCCTGGACCTGTATGTCGATACCGAGCTGAGCGTATCGACCCAGCCGCCGCCGG AGGGTCTGATCCAGCAGCAATGAACCGCTTTCGCGAAATGGATTGCAAACGTAAGTGCTTGAAGTGGTTGTAACTTACGCGCAAGCCGGTAGAATGGCGC
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MTDTQAAAERIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTPASAFGEVRHEIPMLSLGNAFEEQDLLDFDRR VREGLADLLPGGDLLGGGAEVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFMSKAGFEALNAK AVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSGTLPDTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVV FKVNRIAFQRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNATLHNMDEVARLGLRIGDTVVIRRAGDVIPQVM QVVLERRPADAQAIEVPEHCPVCGSAVERTQLVKRSKGKESISEGAIYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDRGLVASPADLYT LTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEETAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQL RDAEHGVQLQEEGEVAAEFAACASLAGFIDKLNIPFIAATGAEKLASRFGSLDGIIRADWLDLRQVERLPERAAKSLRDFFDEPANVQRALAIEAQLREF GMHWQSERKAVEGLPLAGQTWVLTGTLEAMSRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEDGLLKLFDEHGVAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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