Pseudomonas aeruginosa MRW44.1, A542_RS0109310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa MRW44.1 contig00004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCCGATGGCAAGGACGCCCAGGGCCGCGACCGCTGGGAGGCCATCGCCAACGGCAATGACGGCGCCGCCCTCGGCCGCGAGCTGGAGATCGCCGACCT GCTGCGCTTCGTCCAGCGCGCCGGGGTGCGCAACACCGTCTGGCTGACCGCCGACGTGCATTACTGCGCAGCCCACCACTACAGCCCGGAGCGCGCCGCG TTCAAGGACTTCGCGCCGTTCTGGGAGTTCGTCGCCGGGCCTCTCAATGCCGGTAGTTTCGGACCCAACGCGCTGGATGGCACGTTCGGCCCGCAGGTGA TGTTCCAGAAGGCCCCGCTGGTCCAGAACAGTTCCCCCTTCGCCGGCTACCAGTTCTTCGGCGAGGTGGAGATCGATGCGCAAAGCCGCGCGCTCACCGT CACCCTGCGCGACCTCGACGGCGAGCCGGTGTTTTCCCAGGAACTGCAGCCCGACGGCGCCTGAGCCGCGGCGACCCCATTCCGATAAAGGAGTATCCCG
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| DNA Sequence for Gene |
>A542_RS0109310
ATGCACCCCTTGCGTAACGCCGCCCTGCTGGGCGGCCTGGCCCTGCTGGGCCTGCCGGTGGCCAACGCCGCCGAGCTGATCATCTCCGAGTATGTCGAAG GCAGCGGCAACAACAAGGCGCTGGAGTTCTACAACAGCGGCAGCCAGGTCCTCGACCTCTCCGCCTACCGCGTCGAGTTCTATTTCAACGGCGCCAGCGC GGCGGGCCGCAGCATCGACCTGAGCGGCAGCCTGGCGCCGGGCAAGACCTTCGTCCTCGCCAACGGCGTGGCCGACCCGGCGTTGCTGGCGCTGGCCAGC CAGCGGGTGGAAGGCAGCTGGTTCAATGGCAACGATGCGGTGCTGCTGCGCCGGCGCGGCGGCGAGATCCTCGACAGCCTCGGCCAGGTCGGCTTCAACC CCGGCACGACCTGGGGCAGCGGCGATGTGCAGACCCTCGACCGGAGCCTGGTGCGCAAGGCCGACATCCGCGACGGCGACAGCGATCCCAGCGACGCCTT CGACCCGGCGGCGCAATGGCTGGGCTACCCGCGCGACACCTTCGCCAACCTCGGCCAGCATGGCGCTGGTGAGCCCGGCGGCGAGGAGGCCGGCCTGCGA CCGATCCACGAGGTGCAGGGCGCCGGCGCCGAAAGTCCGCTGGTGAACCAGCGGGTCGCCATCGAGGGCGTGGTGGTCGGCGACTTCCAGAACGCCAGCG AGCTGAAGGGCTTCTACGTGCAGCAGGAAGATGCCACGGTGGACGGCGACCCGGCGACCTCCGAAGGCATCTTCGTCTACGACGGCGGCAACGGCAGCGA CGTCAAGCTCGGCGACCGCGTCCGGGTGACCGGCCAGGTCCGCGAGTTCAACGGCCTCACCGAACTGGTCGGGCCGCTGCAGGTCAGCGTCCTGGCGAGC GGCGTGGCCTTGCCGACGCCGGCCGGCATCAGCCTGCCACTGGCCAGCGCCGATGCGCTGGAGCGCTACGAAGGCATGCGCGTGCAGCTCCGCCAGACGC TGACCGTCAACGAGGTCTACAACCTCGGCCGCTACGGCGAGGTCCTGCTGTCCTCCGGCGGCCGCCAGATGACTCCGACCAACGTGGTGGCTCCCGGCGA ACAGGCCAAGGCCATGCAGGCGCGCAACGACCTCGACCGGATTCTCCTCGACGACGGCCGCAGCGGGCAGAACCCCGACCCGATCCGCTACCCGGCACCG GAACTGAGCGCCTACAACAGCCTGCGCGTCGGCGACCGTACCAGCGCCATCGACGGCGTGCTCGACTACTCGGCCGGCAGCTACCGTATCCAGCCGTTGC AGACGCCGACCTTCGAGGCGGCCAATCCGCGTCCGGCCCAGCCGGCGGTGGAAGGGCGCCTGCGGGTGGCCAGCTTCAACGTGCTCAACTACTTCAACGG CGATGGCAAGGGCGGCGGTTTCCCCACCTCGCGCGGAGCCAACACGGCCGAGGAGTTCCAACGGCAGAAAGCGAAGATCGTCGCGGCGATCCTCGCCTCG AAGGCGGACATCGTCGGCCTGATGGAGATCGAGAACGACGGCTACGGCGAGTTCAGCGCCATCGCCGACCTGGTCAACGGCCTCAACGCCAGCCTGCCCC AGGGCCAGCGCTATGCCTTCGTCAACCCGAACCGGGCGAAGCTGGGCAGCGACGAAATTGCCGTGGGGCTGATCTATCGCGGCGACAAGGTCCGCACCTA TCGATCCGCGGCGGTGCTCGACAGTTCGGTGAACCCGGAGTTCGACGATACCCGCAACCGTCCGACCCTGGCCCAGACCTTCCAGGAGATCAATGGCGGC GAACGCCTGACCATCGCGGTGAACCACCTGAAGTCGAAGGGCTCGGCCTGCGACGGCGACCCGGACACCGGCGACGGCCAGGGCAACTGCAACCTGACCC GGGCGCGCGCCGCCCAGGCCCTGGTGGGCTGGCTGGCGGGCGATCCGACGGGCGCCAAGGAGCCTGACCGCCTGATCATCGGCGACCTCAATTCCTATGC CAAGGAAGACCCGGTGAACGTCATCCGCAGCGCCGGCTACACCGACCTGGTGGCGCGTCAGGCGGGCGCAGGAAAGGGCTATTCCTACGTGTTCTCCGGG CAGTCCGGCTACCTTGACCACGCCCTCGCCAACGCCAGCCTGGCGCGCCAGGTACGCGGCGCGGTGGAGTGGCACATCAACGCCGACGAGCCCCGGGTGC TGGACTACAACGTCGAGTTCAAGACCCCTCGGCAGCAGGACAGCCTGTACAACGCCGAGCCGTACCGGGCCTCCGACCACGACCCGGTGGTGATCGGTAT CGACCTGCGCCGGGTGGCGATGAAGAAGCACCGCAGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGCGGATAGCGCCCGTGGCGTTGGTCGCCATGCAGAAAGGCCACCCTCGGGTGGCCTTTCTGCATGGCACGTGGGCCTGTAGGGCGAATAACCGCTTG CGGTTATCCGCCGTTGTGGCGGGATCTCGGCGGATAACGCCGGTGGCGTATTCGCCCCACGGAACGGAGCCCCCTCCAGGGTGGCCTTCCAGTGTGGCAC GTGGGCCTGGTAGGGCGAATAACCGCTTGCGGTTATCCGCCGTTGCGGCGGGATATCGGCGGATAACGCCGGTGGCGTATTCGTCCCACGGAACGGAGGT CACTCCAGGGTGGCCTTGCTGCGTGGCACGTGGGCCTGGTAGGGCGAATAACCGCCTGCGGTTATCCGCCGTTGCGGCGGGATACCGGCGGATAACGCCG GTGGCGTATTCGCCCCACGGAACGGAGGCCCCACCAGGTTCGTACGTCGTCAGCCGCGCAGCGGCGGCAGGTAGCCCAGTTCCATCAGCTTGATGTCCGC
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| Amino Acid Sequence |
>extracelullar DNA degradation protein, EddB
MHPLRNAALLGGLALLGLPVANAAELIISEYVEGSGNNKALEFYNSGSQVLDLSAYRVEFYFNGASAAGRSIDLSGSLAPGKTFVLANGVADPALLALAS QRVEGSWFNGNDAVLLRRRGGEILDSLGQVGFNPGTTWGSGDVQTLDRSLVRKADIRDGDSDPSDAFDPAAQWLGYPRDTFANLGQHGAGEPGGEEAGLR PIHEVQGAGAESPLVNQRVAIEGVVVGDFQNASELKGFYVQQEDATVDGDPATSEGIFVYDGGNGSDVKLGDRVRVTGQVREFNGLTELVGPLQVSVLAS GVALPTPAGISLPLASADALERYEGMRVQLRQTLTVNEVYNLGRYGEVLLSSGGRQMTPTNVVAPGEQAKAMQARNDLDRILLDDGRSGQNPDPIRYPAP ELSAYNSLRVGDRTSAIDGVLDYSAGSYRIQPLQTPTFEAANPRPAQPAVEGRLRVASFNVLNYFNGDGKGGGFPTSRGANTAEEFQRQKAKIVAAILAS KADIVGLMEIENDGYGEFSAIADLVNGLNASLPQGQRYAFVNPNRAKLGSDEIAVGLIYRGDKVRTYRSAAVLDSSVNPEFDDTRNRPTLAQTFQEINGG ERLTIAVNHLKSKGSACDGDPDTGDGQGNCNLTRARAAQALVGWLAGDPTGAKEPDRLIIGDLNSYAKEDPVNVIRSAGYTDLVARQAGAGKGYSYVFSG QSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNAEPYRASDHDPVVIGIDLRRVAMKKHRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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