Pseudomonas aeruginosa 19BR, IAI_RS0121810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 19BR 19BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGCCTGGTGGCTTTCCAGGCCCAGCCGGTGCAAGGCGTTGGCGGTCTGGGTGACGCGGGCGAACAGCTCGGCATAGCTGATCCGCAACGGTTCTTCGG CGGCGCTGCCATGCAGCAGGCAGCTCAGGGCGATACGCTGGCCGTGGCGCTGGGCCGAGCGTTGCAACAGTTCGTAGGTGCTGGACGGCAGGTCGCGCTG CTCCAGCGGCACGCGTTCCAGGGCTTCGATATCGCTCAGCCCGACGATCGATGGGGACGGATTCATGGTTTTCTTGTTCTTCCGTTGGTGAGTGGGCGGA CACTCGCCGGATCGCTCCGGCACCGTCCCGAAGATGCCACCCCCGTCGTCGCCCTACCGTTGTCTTTTTGTAGCGCGCCACCGGTCGCGCGCACGAGTCC TCCCGAAGGCTGCCCGGGAGCTTCGCGCAGCCCCCTCCAGGCCCCGTCCGGCCAGGGCTGGAGGGCGCCGGCCAAGCATGGATTTCTCCCCGCTGGCAAC
|
|
| DNA Sequence for Gene |
>IAI_RS0121810
ATGCTTTACACTGGCGCCCGTTCATTCCTTAACCACTACGAGATCGCCGTGCTCAAAGCACTCAAGAAAATCTTCGGCAAGGCCGACGGAACCCAGCCGC AGAGCGGTTCCTCCCCGGTCCCGCAAGGCCCTGCCGGCGCTACCGCGAAAGGTACCGCCCCCACCGGCGAAAAGCCGACCGAGAAACGCCCACGCAAACC GCGCCCCCCGCGCGCCGACAACGAGTCCGGCGCCCCGCGCGCCGCTGAAAAGGCCGAGAAAGGCGAAAAGCCCGCCAAACCCGCCGGCAAAGAAGGCCGG GACGCCAAGCCGCGCAGCGACAAGCCGCGCCGCGAACGCAAGCCGAAGCCGGTGGACAACTGGAAGCTGGAAGACTTCGTGGTCGAACCGCAGGAAGGCA AGACCCGCTTCCACGACTTCAACCTCGCCCCGAGCCTGATGCACGCCATCCATGACCTCGGCTTCCCCTACTGCACCCCGATCCAGGCGCAGGTACTGGG CTTCACCCTGCGCGGCCAGGACGCTATCGGCCGCGCCCAGACCGGCACCGGCAAGACCGCCGCGTTCCTCATCTCGATCATCACCCAGTTGCTGCAGACC CCGCCGCCGAAAGAGCGCTACATGGGCGAGCCGCGCGCGCTGATCATCGCCCCGACCCGCGAACTGGTGGTACAGATCGCCAAGGACGCCGCGGCGCTGA CCAAGTACACCGGGCTGAACGTGATGACCTTCGTCGGCGGCATGGACTTCGACAAGCAACTCAAGCAGCTGGAAGCGCGCTTCTGCGACATCCTGGTAGC CACCCCAGGCCGTCTGCTGGACTTCAACCAGCGCGGCGAGGTGCACCTGGACATGGTCGAGGTGATGGTCCTCGACGAAGCCGACCGCATGCTCGACATG GGCTTCATCCCGCAGGTCCGGCAGATCATCCGGCAGACCCCGCACAAGGGCGAACGCCAGACCCTGCTGTTCTCGGCGACCTTCACCGACGACGTGATGA ACCTCGCCAAGCAGTGGACCGTCGATCCGGCGATCGTCGAGATCGAGCCGGAGAACGTCGCCAGCGACACCGTCGAGCAGCATGTCTACGCCGTGGCCGG CAGCGACAAGTACAAGCTGCTGTACAACCTGGTGGCACAGAACAACTGGGAACGGGTGATGGTCTTCGCCAACCGCAAGGACGAAGTCCGCCGCATCGAG GAACGCCTGACCAAGGACGGCATCAGCGCCGCCCAGATGTCCGGCGACGTGCCGCAGCACAAGCGCATCCGCACCCTGGAAGGCTTCCGCGAAGGCAAGA TCCGCGTCCTGGTGGCAACCGACGTGGCCGGCCGCGGCATCCACATCGACGGCATCAGCCATGTGATCAACTTCACCCTGCCGGAAGACCCGGACGACTA CGTGCACCGTATCGGTCGTACCGGCCGCGCCGGCGCCTCGGGCACCTCGATCAGCTTCGCCGGCGAGGACGATGCCTTCGCCCTGCCGCCGATCGAAGAA CTGCTGGGCCGCAAGATCACCTGCGAGATGCCGCCGGCCGAACTGCTCAAGCCGGTACCGCGCAAGCACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGCAGGCGTGGAGAAAAAAAGGCGAAGCCATCCGGCTTCGCCTTTTTCGTTTCTGCGACACGCAGGTGCCGCCGTCGGTCATCGAGGCGGGTCGGCGCT TGCCCGACAATACCTTAAAGTCCAGAATGGACAAATTGTTTACATCCATTCCGGAGATCGCATGAGCGCCGCCACTCCCCTGATCGTCCAGCAGGCCGAA GCCGAGCAACTACTCGCCCGTATCGACGTCCTCCAGGCCATGCGCCAGCTGTTCCTCGACCTGGCCGCCGGCCAGGCGCTCCAGCCGGCCCAGCAACTGG TGGAGTTCCCCGCCGGTCGCGGCGACTTCATCAACTACCTCGGCGTGCTCGCCCAGGAACAGGTCTACGGGGTCAAGACTTCGCCCTACATCGTCCGCGA ACAGGGCCCGTTGGTCACCGCCTGGACCCTGCTGATGTCGATGCAGACCGGCCAGCCCTTGCTGCTCTGCGATGCCGCCCGGCTGACCACCGCGCGCACC
|
|
| Amino Acid Sequence |
>RNA helicase
MLYTGARSFLNHYEIAVLKALKKIFGKADGTQPQSGSSPVPQGPAGATAKGTAPTGEKPTEKRPRKPRPPRADNESGAPRAAEKAEKGEKPAKPAGKEGR DAKPRSDKPRRERKPKPVDNWKLEDFVVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM GFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIE ERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE LLGRKITCEMPPAELLKPVPRKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|