Pseudomonas aeruginosa 19BR, IAI_RS0108615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 19BR 19BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGCGCGAGGGCGACGCCCTCGAACTGGCCCGGCATTTCGCCGAGCGCGCCTGCGTGTTCCTGCGCCGCGCGCCGCTGGGCTGGTCCGCGGAAGCGCTG GAACTGCTCGACGGCTATGGCTTTCCCGGCAACGTTCGGGAGCTGAAGGGACTGGTGGAATGCGCGGTACTGCTCTGCGAAGGCGAGATGCTGCTGGCCG AACACTTTTCCCTGCGCGCGCCCCCGGAAGCGGAGGCGCCGCTCAAGCTGCGCGAGCATCTGGAGCAGATCGAACGGGACCTGCTGCTCGCCTGCCTGCG CAGGAACGCTGGCAACCAGACCCTCGCCGCGCGCGAACTGGGTCTGCCGCGACGAACCCTGATCTATCGCATGGGACGCCTGAACATTCATTTCGGCGAT CCCCGGACCTGAAGCCCATGATCGAGATTTCCTTCCAACCAGCCCAGCCGGGCGCGCGCCTGGAGCGCGGCGTCCGCGGCCCTTCCATGGAGACTCCCTG
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| DNA Sequence for Gene |
>IAI_RS0108615
ATGCCTGTTCGTCACTGGCCCGCCGTGCTTCTGGCCCTGGCCGTCCTCTGCGGCCTCGCCGGTTGCAGCGGCAACTACAAATTCAACGACGGCGACTATC GCCCGCTTGGCGATCCGCAGGCGGTCAATCGCGGCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCAAGGAGCGATCTCATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTATGCAGCAAGACCTTCGGCAGGAACGGCGG CCTCATCGGCCGCGGCGGTGAGTGCGATTGGGCGATTCCCGATCGCAAGCGGCACCTGTCCAAGCAGCATGCGCGGGTCAGCTATCGCAACGGCGCGTTC TACCTGACCGACACCAGCAGCAACGGCATCCGCGCCGGCAACGGCAGCCGCCTGCCGCATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGC TCGGCGACTTCGAGATCCGCGCGCGGTTGCTGCGCGAGCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCGGCGGGCAGCATCATTCCGGACGA TGCCTTCCTGGCCCTCGATCCGTTGCAGGCGCTCGACCAGGACGGTGCAGATGCCTACGAACTCGACGACCTGAGCGCGATCGCCCAGCCCAGTCATGAG
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| Amino Acid Sequence |
>type VI secretion protein
MPVRHWPAVLLALAVLCGLAGCSGNYKFNDGDYRPLGDPQAVNRGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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