Pseudomonas aeruginosa 213BR, IAK_RS0125205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACTCGATCAACGGCAACAACGTATCGAAATGGTGCGACGCGGCCTACGACAAGCTGGTCAAGGCTGCCAAGCGGGTCTCCGACCAGGACAAGCGCAGCG AGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAGCAGGTGCCGATCACCCCGATCGCCCACTCCACCGTGTACCAGCCGATGAACAAGTCGGTGCATGA CTTCAAGATCAGCCCCTTCTCGCGGAACGCCTTCTATGGCGTAGCCAACCAGCCCTGATGCCGACGCCACCCCGGTCGTGAAACGACCGGGGTGCAGAAG AACGGCACGACCCGTACTTCATTTCTTTGCTTTTCCTGCCCGTATTCCAGAACGGCGCTGCGCGCGTTCCGCCAGGAGCGCTCGCCTCGCCGTATTCGAC CGCCGCGCCCAGGCGCGGGCGAAACCGGCGCAAACCTGGTGGGTAAAACAGGTGCCATGACAACAATAAAGGGAGCAATCAGGTGATGAGATACCAACGA
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| DNA Sequence for Gene |
>IAK_RS0125205
GTGACCGGCGCGACGCTGGGATTGGCCTTGATGGCATCGGCCGCGCCAGGCTGGGCAGCGGACGAGCAGGCAACCCCGCCGACCCCGGACAATCCCAGCT ACGCCGCCCAGGTGCAGAGCATCCCCAGCGTGGAGAAACCGATCAAGGGCCAGGCCGGCGCCAGCGGGCTGTTCGAGGGGCAGAGCCTGACCCTGACCAC CCGCAACTTCTACTCGCGGGAAAACATGAAGGACAGCTTCACCTTCCGCATTCCCAAGGCCGGCGGCGGCTCCCAGCGCATCCACCAGCGCAACGCCTGG GTCCAGGGCACGGTGCTCAAGTACAGCTCGGGCTACACCCAGGGCAGCATCGGCTTCGGCTTCGACGTCGCAGCCTTCAACGAGATCGCCCTGGAGCGCG GCAAGGGCCGCATCGGCGGCGGCGGCAACCGGACCCTGGCGAACAGCGATGGCGAGGCGATCGGCGAGTGGTCCAAGCTGGGCGTCGCCAACATCCGCCT GCGCGCCTCGAATACCGAATTCAAGGCCGGTCGCTTCCTGGTCAACACTCCAGTGTTCAGCTATATCGACAACCGTGCCCTGCCCTCCAGCTTCACCGGC TTCGCCGTGACCAGCGAGGAGCTGGACAACCTCAGCCTGCAGGCCGGCAGCTTCCGCAAGGTCAGCCCGCGGACCGGTTCCGGCGACGAGGACATGACCA CCGAGTACGGCACCCGCCAGGTCAAGGGCGACCGCCTGAACTACCTGGGCGGCAACTACAAGCCGCTCGACGGGCTGGAAATCTCCCTCTATGGCTCGCA TTTCCAGGACGTCTGGAACCAGTACTACCTGGGCGTGACCCACGACATCGGCGACCTCGAGAACGGCATCGCCCTGCGCACCGCCTTCAACGGCTACCAC ACCGGCGACACCGGCGCGCGCGAGGCCGGCTACATCGACAACGACACCTGGAGCCTGGCCTTCACCCTCGGCCATCGCGCCCACGCCCTGACCCTGGCCT ACCAGCAGGTCGACGGCAACGAATACTTCGACTACGTGCACGAGACCTCGGCGATCTTCCTGGCCAACTCGATGCTGGCCGACTACAACAGCCCCAACGA GAAGTCCGCGCAGATCCGCTACGAGACCGACTGGAGCTACTACGGGGTCCCCGGCCTGAGCACCGGCGTGTGGTACGTGAAGGGCTGGGACATCGACGGC ACCCACTACGACGGCGATCGCAACGGTGCCTACGGCAACTACGCCGAGGTGCGCGCCCAGGACGGCGAGAAGCACCACGAGCTGGGCCTGATGGCGGCCT ACAAGGTGCAGAACGGGCCGATCAAGGACAGCACCTTCAAGCTCACCTACATGATGCACAAGGCCAGCCAGAACCAGGTCGACGGCAGCGTCAACGAACT GCGCCTGGTCAGCACCTTCCCCTTCAACCTGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGCGACAACCGGCGGCCCCGGCGACGGGGCCCACGAGGAGGACCCCATGCTCCATCCGTTGCTCCGACACCTGCCCCTGGCCCTGGCGCTATGCGCC GCCGGCGCGGCCCAGGCGAAGAACCTGGTGGTCTGCACCGAGGCCAGCCCGGAAGGCTTCGATATCGTCCAGTACACCGGCGCGGTGACCGCCGACGCCT CCGCGGAAACCGTGTTCAACCGCCTGCTCGCCTTCCGCCCCGGCACCACCGAGGTGATCCCGGGGCTGGCCGAGCGCTGGGACGTCAGCGCCGACGGACT GAGCTATACCTTCCACCTGCGCCCCGGCGTGAAATTCCATACCACCGACTACTTCAAGCCGACCCGGAGCCTGAATGCCGATGATGTGCTGTGGACCTTC CAGCGCGCCCTCGATCCGAAGCATCCCTGGCATGCCTCGGCGCTGCGCGGCTACGCCTACTTCGACGCGATGGGCATGGGCGAGCTGATCAAGTCGGTGG
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| Amino Acid Sequence |
>porin
MTGATLGLALMASAAPGWAADEQATPPTPDNPSYAAQVQSIPSVEKPIKGQAGASGLFEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNAW VQGTVLKYSSGYTQGSIGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEAIGEWSKLGVANIRLRASNTEFKAGRFLVNTPVFSYIDNRALPSSFTG FAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGLEISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYH TGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDGNEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDG THYDGDRNGAYGNYAEVRAQDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQVDGSVNELRLVSTFPFNLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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