Pseudomonas aeruginosa 213BR, IAK_RS0123040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTTCTGGGTCAACCTGCTGGAGGTGCCGGGGCGGGAGGACGGCAGCGGCAACCTGCTGCTGGTGAGCTACCGCCTGCGGATGAAGCTCCTGTTCCGTCC GCAGGGTCTGGCCGGCGATCCGCGAGCCGCCGCGCGCCAGGTCGTCTGGCGCCTGCGTCCGGCGGTACGGCCGGGGCAGCGGGCGCTGCTGGAGGCGGAC AACCGCAGTCCCTATCACGTTTCCCTGGTGCGCCTGGAGCTGGGCGAGGGCGACCTCGCCATGTCCCTCGGCAGCGTCACCTTGCCGCCTTTCGCCGTTA CCCCGTTGAGTCTGCCGGCCGTGCCCGGCGAGGCGGTGCGGGTCCATTTCGATGCGGTGGGGGATGACGGCCAGATCGAGCGCGGCGACGCGCCGGCAGA GAGATACCCGTAGGAGTTCGGCAGGGCCCGGGGAGTTGGGCTCCTGCCGTAGCACGGCCCTGCGAATAGGTCGCGGGGTTTCACTGGAGGAAGGAAGCAC
|
|
| DNA Sequence for Gene |
>IAK_RS0123040
ATGAACAAATGCTATGCACTGGTCTGGAACGTATCCCAGGGCTGCTGGAACGTCGTCAGCGAAGGCAGTCGCAGGCGCGGCAAGCCCGCCGGCGCCAAGG CGGCGATCGCCTCCGTCCTGGCCCTGCTGGGCGCCACGGCCCTGGCTCCGGCCTATGCGCTGCCAAGCGGGGGAACGGTGGTCGGCGGGAGCGCGAACGG GGAGATACACCTGTCGGGCGGCAACAGCCTGTCGGTCAACCAGAAGGTCGACAAGCTGATCGCCAACTGGGACTCCTTCAGCGTTGCCGCCGGCGAGCGG GTGATCTTCAACCAGCCGAGCAGTAGCTCGATTGCCCTGAATCGGGTGATCGGCACCAAGGCCAGCGATATCCAGGGCCGGATCGATGCCAACGGCCAGG TCTTCCTGGTCAACCCCAACGGCGTGCTCTTCGGTCGCGGCGCCCAGGTCAATGTCGGCGGCCTGGTGGCTTCCACGCTGGACATCACGGATGCCGAGTT CAACGGCAACTCCTCCAGATACCGTTTCACGGGTCCCTCTACCAACGGTGTCCTCAACCACGGGGGCGCCATCACCGCGGCGGAAGGCGGCAGCATCGCC CTGCTGGGCGCGCAGGTCGACAACCGCGGGACGGTCCTGGCGCAGATGGGCGGTGTCGGGCTCGGCGCGGGCAGCGACCTGACGCTGAATTTCGACGGCA ACAAGCTGCTCGACATCCGCGTCGACGCCGGGGTCGCCAATGCGCTGGCAAGCAACGGCGGCCTGCTCAAGGCCGACGGGGGGCGAGTCCTGATGGCGGC CAGGACCGCCAATGCGCTGCTCAACACGGTGGTGAACTCCCAGGGTGCCATCGAGGCCCGTTCGCTGCGCGGCAAGAACGGGCGGATCGTGCTCGATGGC GGCCCGGACGGCAAGGTCATGGTGGGAGGCGCCTTGTCCGCCAATGCGCTGAACGGACCGGGGCACGGCGGCACGGTCGAGGTCCGGGGGCAGGCGGTGG AGGTGGCCCTGGGCACCCAGGTGAACACGCTCGCCAGCAATGGCCTCAACGGCACCTGGAAGATTGCCGCCGACAAGATCGACGTGCGCCCATCGGCGGT GTCGGATGGCGTCACCGTTCATGCCGACACCCTGTCGCGGAACCTGGCGAGCACCAATATCGAACTGGTTTCGACCAAGGGCGACCTGGACCTCGACGGC TCGGTGAGCTGGGCATCGGGCAACCGGCTGGGGCTGGGCTCCGCGGCCGACCTGACGCTGAATGGCAGGCTGAATGCCAGTGGCGCCAAGGCTGGGCTGG AGCTGAAGGCCGAAGGCGCTATCGATATCAATGACAAGATCGTTCTCGGCGGGGCTGGCAGCGCGCTGGCCATGGATGCCGGCGAAGGCCACCGGGTGAA CGGCACGGCGTCGGTCTCCCTGGCCGGGGCCAACGCGACCTACGTCTCCGGCGGCTATTACTACACGGTGGTGCAGAACCTGGCGCAGTTGCAGGCGATC AACAAGAACCTGGACGGCCTGTACGTGCTCGGCGGCAATATCCTGGGCGGCAGCTATTACTGCACGGCACTGCAGTCCATCGGCGGGCCCGCCGGCGTCT TCAGCGGCACCCTGGACGGTCTCGGCAACAGCATCGGCAATCTCTCGATCAGCAACACCGGGCCGAATGTCGGGCTGTTCGCCCGCTCCTCGGGCACCCT GAGCAACCTGAAACTGAACAACCTGCGGGTATCCGATAACACCTACGGCTCCGGTCCGTCTTCGCTCGGCGCCCTGGTCGGGATCAACAGCGGGCGTATC GCCAACGTCAGCGCCAGCGGGGTCTCGGTCGTCGGCAGCCGACTGCGCTCCAACGCACTGGGCGGCCTGGTCGGGCGCAATATCAACGGGCAGATCACGA ACGCATCCGTCAGCGGCGGCGTCACCGCTTATGCGGCGAGCACGGCGGTCGGCGGTCTGGTGGGGGAGAACTTCACCACCGCCTGGGGGCCGGAGGCGGT CATCGAGAACGCCCACAGCAACGTCCATGTGGCTGCACAGTCCACCGAGCGCAACAGCCTGGGCGGCGTCGGCGGCCTGGTCGGACTGAATGCGAAGGCC ACGATCAGGGCGTCCGGCAGCCAGGGGAAGGTCGAGACCTACCGGCCCGGCCTGAACGTCGGCGGCCTGGTCGGCTACAACATGTTCGGCCACGTCTCCG ATAGTAGCGCCAGCGGCCAGGTGGAGGCCGGCGGCGCGGGGAATACCGGCGGGCTGGTCGGCCTGAGTTCCGGCGGCGAGATATTCCGCTCGCAGGCGAG CGGGTCGGTGTACAGCAAGGGCGGCCTGGCGACCGGCGGGCTGATCGGCAAGGCAGAAGGCAACGGCATGCTCGGAAACCTGAAAGCCAGCGGCAGCGTC ACGGACCAGGGCGGCGCGGATCTGGGCGGGCTGGTCGGCAACAATAGCCAGGGTGCCATCGAGACCGCCGAGGCGACGGGCAAGGTCAGCGGCGGCAGCA ACAGTCGCGTCGGCGGGCTGATTGGACACAACCTCGGCGGTTCCGTCGCCCATGCGATCTCGCGCGGCGACGTGAGCGGCGGGTTCAACAGTCTGGTGGG CGGGCTCGTCGGCCACAACGGCGGCGAACTGGTCAACGTGGATGCCAGCGGCAGGGTCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGC AACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGTACCGTCAACGGCAGCGGGCGCAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGAC GCATCGTTTCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATGGGCGGGCTGGCCGGCGTCAACCTGGGATCGATCGAGTACTCCGG CGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTACGGTGCGCAGGTCGGCGAGAACCATGGGGTCCTGGGCGGCAACTACGTG ATCGGCGAGGCGGCGCTCCTGCCGCCTGCCGGTATCGACTACGGCAACATCTGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCCGGCAGGGGAGGTCCCTGGCGGACCTCCCTTCCCGGCCGGGGCCGCTCTCGCCTGGAGTGTGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCCA TGAGCATGAGGTTATTTCCCGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGCCTCTGCTGCCTGACCGGCGG CCAGGCCTGGGCCCTGAACGAGGTCGCCCTGAACTGCTCGTTCGACAATGGCAAAGGCTTGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGCG AAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAACTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCATCGGGGGGAACTGGT CCGGGGTGGGCTTTCCGGGGCCTTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGGT
|
|
| Amino Acid Sequence |
>adhesin
MNKCYALVWNVSQGCWNVVSEGSRRRGKPAGAKAAIASVLALLGATALAPAYALPSGGTVVGGSANGEIHLSGGNSLSVNQKVDKLIANWDSFSVAAGER VIFNQPSSSSIALNRVIGTKASDIQGRIDANGQVFLVNPNGVLFGRGAQVNVGGLVASTLDITDAEFNGNSSRYRFTGPSTNGVLNHGGAITAAEGGSIA LLGAQVDNRGTVLAQMGGVGLGAGSDLTLNFDGNKLLDIRVDAGVANALASNGGLLKADGGRVLMAARTANALLNTVVNSQGAIEARSLRGKNGRIVLDG GPDGKVMVGGALSANALNGPGHGGTVEVRGQAVEVALGTQVNTLASNGLNGTWKIAADKIDVRPSAVSDGVTVHADTLSRNLASTNIELVSTKGDLDLDG SVSWASGNRLGLGSAADLTLNGRLNASGAKAGLELKAEGAIDINDKIVLGGAGSALAMDAGEGHRVNGTASVSLAGANATYVSGGYYYTVVQNLAQLQAI NKNLDGLYVLGGNILGGSYYCTALQSIGGPAGVFSGTLDGLGNSIGNLSISNTGPNVGLFARSSGTLSNLKLNNLRVSDNTYGSGPSSLGALVGINSGRI ANVSASGVSVVGSRLRSNALGGLVGRNINGQITNASVSGGVTAYAASTAVGGLVGENFTTAWGPEAVIENAHSNVHVAAQSTERNSLGGVGGLVGLNAKA TIRASGSQGKVETYRPGLNVGGLVGYNMFGHVSDSSASGQVEAGGAGNTGGLVGLSSGGEIFRSQASGSVYSKGGLATGGLIGKAEGNGMLGNLKASGSV TDQGGADLGGLVGNNSQGAIETAEATGKVSGGSNSRVGGLIGHNLGGSVAHAISRGDVSGGFNSLVGGLVGHNGGELVNVDASGRVSAAASASVGGLVGS NAGSILSARSSSTVNGSGRSRIGGLVGENQIQGRIVSSMSEGTVSGDYYVSMGGLAGVNLGSIEYSGVSGKIDFKPQSHYGQIYGAQVGENHGVLGGNYV IGEAALLPPAGIDYGNIW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|