Pseudomonas aeruginosa 213BR, IAK_RS0122730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGAGGTTCGCCAGGGCCTGCTGGCCTACCGCTGGCCGGGCAACGTCCGGCAGATGCGCACGGTGCTGCGGACCCTGGTGGCACTCTGCGAGGACGGC CGGGTCGGCCTGCGCGACCTGCCCGCGGATATCCGCCAGGCCCTGGCGGCGCTGCCGCCCGCCGCAGCGGCGCCCGCCCCGGCCGCGGGCAACAGCCTGG ACGACGCCGAGCGAGCCGCGTTGCTGGCGGCTCTGGACGGCCAGCGCTGGCACGTGAGCCGGGTGGCCGAGCAACTGGGGATCAGCCGCAACACCCTGTA TCGCAAGCTGCGCCGGCACGGCCTGGTGCGCGGCCAGGCCTGACGGGCGGGACGGCTCCAGGCGGGCCGCCGCGAGGCCGGCGGGAACCCCGCCGACGCC GCGTCGTCTGATGCCGCGACGCCGGGCGGCCGGCGCCTCCGCTGTGCTAATCTGCCGCCCATTCACAGCGCCTTCGACGGCTTGATCTGCAGGAGTCTGC
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| DNA Sequence for Gene |
>IAK_RS0122730
ATGCACATCCACGTACTCGGCATCTGCGGGACCTTCATGGGCTCGCTGGCCGTGCTGGCCAAGGAACTGGGCCACCGGGTGACCGGTTCCGACGCCAACG TCTACCCCCCCATGAGCACCCAACTGCAAGCCCAGGGCATCGAGTTGATGCAGGGCTACGATCCGGCCCACCTGGAGCCGGCGCCGGACCTGGTAGTGAT CGGCAACGCCCTGTCGCGCGGCAATCCGGCGGTGGAGCATGTCCTGAACAAGGGCCTGCCCTACGTTTCCGGCCCGCAGTGGCTGGCCGACCACGTGCTG CAAGGACGCTGGGTGCTGGCGGTGGCCGGTACCCACGGCAAGACCACCACCACCAGCATGCTCGCCTGGGTCCTGGAGCACGCCGGCATGAGCCCGGGCT TCCTGATCGGCGGGGTGCCGCAGAACTTCGGGGTTTCGGCGCGCCTGGGCGGTACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCTCGAAGTTCGTCCATTACCGCCCGCGCACGGCGATCCTGAACAACCTGGAATTCGACCACGCGGATATCTTCCCCGACCTCGCGGCCATC GAGCGGCAGTTCCACCATCTGGTGCGCACCGTGCCGGGCGAGGGCCTGATCATTCGCCCGAGCGCCGAGAAAGCCCTGGAGCGCGTACTCGGGATGGGCT GCTGGACCCCGGTGCAGACCACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCGCCGAGGACGGCTCGCGCTTCGAGGTGCTGTTCGACGGCATCGT CCAGGGCGAGGTGGACTGGCCGCTGACCGGCCTGCACAACGTCGCCAACGCCCTCGCCAGCCTGGCGGCGGCGCGCCATGTCGGCGTGATGCCCAGCCAG GGCGCGGCGGCGCTCAGCGAGTTCCGCAACGTCAAGCGGCGCATGGAGAAGGTCGCGGAGGTCCAGGGCGTGACCCTCTACGACGACTTCGCCCACCATC CGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCAGGTTGGCGCGGATACCCAGGTGATCGCCATCGTCGAGCCGCGTTCCAACTCGATGAAGCT CGGCGCTCATCGCGACGGCCTGCCGGACAGCGTGCGCCAGGCCGACCAGGTGCTCTGGTACGCGCCGCCGAACCTGGGCTGGGACCTGGCCGCCACCGCC GCGCAATGCGCGATACCGTCGCAGGTCTGCGATACCCTGGAGGCGATCATCGAGCAGGTGCGCCAGCAGGCCAGGCCCGGCGCGCAAGTGGTGATCATGA GCAACGGCGGCTTCGGCGGCTTGCACGGCAAGCTGGCCGCGGCGCTGGCCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGCGCGATGAGCGGTCCGGAACGCATTACCCTGGCGATGACCGGCGCCTCCGGCGCCCAGTACGGCCTGCGCTTGCTCGATTGCCTGGTGCAGGAAGA GCGCGAGGTGCACTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCCACCGAGACCGACGTGGCCTTGCCGGCCAAGCCGCAGGCGATGCAGGCCTTC CTCACCGAATATTGCGGTGCCGCCGCCGGACAGATCCGCGTGTTCGGCCAGAACGACTGGATGGCGCCGCCGGCCTCCGGCTCCAGCGCGCCCAATGCCA TGGTGATCTGCCCGTGTTCCACCGGCACCCTGTCGGCGGTCGCCACGGGGGCCTGCAACAACCTCATCGAGCGCGCCGCCGATGTCGCCCTGAAGGAGCG CCGGCCGCTGGTGCTGGTGCCGCGCGAGGCGCCGTTCTCCAGTATCCACCTGGAAAACATGCTCAAGCTGTCCAACCTCGGCGCGGTGATCCTGCCGGCG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHVLGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELMQGYDPAHLEPAPDLVVIGNALSRGNPAVEHVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTTSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTVPGEGLIIRPSAEKALERVLGMGCWTPVQTTGEGGQWQARLLAEDGSRFEVLFDGIVQGEVDWPLTGLHNVANALASLAAARHVGVMPSQ GAAALSEFRNVKRRMEKVAEVQGVTLYDDFAHHPTAIATTLDGLRKQVGADTQVIAIVEPRSNSMKLGAHRDGLPDSVRQADQVLWYAPPNLGWDLAATA AQCAIPSQVCDTLEAIIEQVRQQARPGAQVVIMSNGGFGGLHGKLAAALAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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