Pseudomonas aeruginosa 213BR, IAK_RS0118165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTATCGGACCGTTGAACGTTACCTGCATCCAGGCGCCGGTATTCTTCGGCGATAGCCTCAGCGTGACCCTGCAGTGCGCGGAACCGGTGGACCTGGCCGC GGTGACGCGGGTCCTCGATGCGACGAAAGGTATCGAATGGGTCGGCGAGGGCGATTATCCGACGGTGGTCGGCGATGCCCTCGGCCAGGACGAGACCTAT GTCGGCCGGGTGAGGGCGGGGCAGGCTGATCCCTGTCAGGTCAATTTGTGGATTGTGTCTGATAATGTGCGAAAAGGTGCCGCGCTGAATGCCGTGCTCC TGGGTGAGTTGTTGATAAAACACTATCTGTAAAAGATACTTACCCACAGATTTGTAGAATTATTCGAGCTTGTTAATACTGGTTCGATCCGCTGCTGCCG GGGAGCGTCCGTCCATGCATGGCTGGGCGAGCGGACAGCAAGCACCGACGCACTCCCTCTCGTGAAACGAGAAAAGATATTAAAACCAAGGGATTACACT
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| DNA Sequence for Gene |
>IAK_RS0118165
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACTGGGGGAAATCACCCTGAAGT CGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTTCGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTT CAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGACCTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCG AAGCCGGTGCAGGAGCCCTACCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAGGCTCCGGCTCCGGTGCGTAC CACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAG GCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGC AGATGCTGGAGCGCTCGCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGGTGTCTGGCGAGGGCAAGGCC AGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCGGTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACG AAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTTGGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCA GTTGGGCGCCGAAGGCCAGGGCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGCTGCCGAGAAGC CTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGAGCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGC GGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTGCTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCC GCGGATACCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTT GCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAG GAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGG CCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTCGACGATCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGACGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCGGGGCGCTGGACGACCTGACC CTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGA GCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGA AGTGCCCGCCGCGGCGCCCGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCA ACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAAGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCT CTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTG GCCGAAGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGAAATGAAGCGACCCTCATGAACGATGTTGTTCCGCCAGCGGCAGCCGAATCGGCTGCCGCTGGCGTTTCCAGAATCGCCCTCGGCATCGAGTACA AGGGCTCCCGCTATCGTGGCTGGCAGCGCCAGGAAGCCGGCGTGCCTTCCGTGCAGGAAGCGCTGGAGCGCGCCTTGTCGAAGGTTGCCGCCGAGCCGGT CGGGGTGATCTGCGCCGGCCGTACCGACGCTGCCGTTCATGCCAGCGGCCAGGTGGTGCATTTCGACACCGCGGTGGAGCGCCCGTTGAAAGCATGGGTG ATGGGCACCAACGCCAACCTGCCCGCGGATATCAGTGTGACCTGGGCGAGGGTGATGCCGGCGCATTTCCACGCGCGCTTCTCGGCCATGGCCCGGCGCT ATCGCTACGCCATCTACAACGATCCGATCCGCCCGGCGCACCTGGCCGAGGAGGTCACCTGGAACCATCGGCCGCTGGATATCGGGCGGATGCGCGAGGC
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| Amino Acid Sequence |
>peptigoglycan-binding protein LysM
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTDLKFTPVVKPNGKSVIRVTSS KPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQAPAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQ AMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSPREALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKA SKGADKGGKGDSKAIADTLAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEEAQAFA ADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQ ENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLDGDDVQADLKSDSGALDDLT LDSDLDLAASTAADKPVDDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDILDEVL AEGNDSQQAEARELLERLA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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