Pseudomonas aeruginosa 213BR, IAK_RS0112720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details]
DNA Sequence Upstream of Gene
TATTTCTTCGCGCCGCGGGTCGAGTTGCAGCGGCTGACCCTGGATGTCGCCGCGCGCGCCAACGACGACTCGCCGATCGCCGTGGATTTCGTCGCGGTGA AGGATGCGGAGCTGTTCAAGGAACTGGCCGGACTGCCGGCCAGCCAGTGGTTCGCCAATCGCGAGCAGTACCGCCGCGACTACCGGCAGCAGTTCGCGGT ATGGAGCCTGGAGCTGGTCCCGGGGCAGTTCATCGAGTCGGAGTCCTTCCCCTTGCGCGGCGACCGCGCAACTGGACTTTTGGTCTTCGCCGGCTATAAC ACACCCGGCGCGCACCGCTTGCGCCTCGACCAGCAGCAGCGCGTCTGGCTGCGTCTGGATACCCGGGAAATGCGACTGGTCAACGATCCCGCCACGCGCT AGCGAAGGGGCAGGCGAGCGACCGTCGTGCACGACAACGTAGGACGTCGAAGGGGAGTCGTATGAGTGTTCTGCCTGACGCGGTGTGCTGGCACGAAGGG
DNA Sequence for Gene
>IAK_RS0112720
ATGCAACTGCTTCCCCAGCATTTCCAGTTGCAGGGATTGCGTGCCGAGGCGCTGGCGGCGCGCATCGGACAGGCCTGCAACCCTTGGTTCTGGGGAGTCA CCGCCCTGGAACTGGACCCCTCGGCGTTGTGCGCCGGCCAAGTGCGGGTCCTGCACCTCGAAGCGATCCTGCCCGACGGCCTGCCGGTGAGCGTGCAGGC TGGTGTCGACGCGCCGCTGGAGTTCGATCTGGAAACAGCGCTGGCGGCCGCCGAAGGGCCGCTGCTGAACGTCCACCTGGCGGTCAGTCCGCTGTGGCGG GCGGGTCAGTTGCTGCCGCTGAAGGGCCGTCTGCAATCGCGGGTCGGCGCGCCGCTGCCGGACCTGGCCAGCGGCGAGCACCCCGAGCCGATCACCGTCT GGCGAGCGTCGCTGCGGCTGGTCGGCGACGACGGCAAGGCCGACTCCGTGTGCCTGCCGTTGCTGCGCGTGGCGAAGGAGGGCGGCGCCTACGTCAGCCT GCCCTACGTCCCGCCGACGCCATTGATCCTGCCGGAGTCGCCCCTGGGCAGACGCGTGCAGTCGCTCTGCGCGCGGGCCCGGGAGAAGGCGCTGTTCCTC GGCGGGCGCCTGCGCCTGGCGCAGCAGGCGGGCAACCAGGACGACGCGGTGGAAATCCGTCGCCAGCTTGCCGCGCTCTGGACCCGCCTGCCGGAGGTCG AAGGCCTGCTGGCAAGCCGTGCGGCCTCGCCGCTGGCCCTGCACGGCAGCCTGCTGGGCCTGGCCGGCGCCTGGGCGGCGCTCGATCCGCTGGCCGGCGT GCCGGCCTTCGAAGCGCTCGACTTCCTCGACCTGCGGCGTGGCTACGAGCCGCTGCTGGACTGGCTGGAGCGGGCCATCGAGTCGATCCGCGCGGGCTAC CGCTGCCTGCCGTTCGAGCAGGAGGAGCAGGTATTTTCCGTGCGCCTGCCCGATCCGGCGCCGCGTCAGCGCCTGGTGGTCGGCCTGCGGATGCCCGCCG GCGCCGGCGAACAGGCGGCGGCTGACTGGCTGGAGCGCGCCATCGTCGCCTCCGACCCGCACCTGCCGTTGCTCGCCCGGCAACGCATGAGCGGGCTGGC GCGGCAACCGATGAATCGCCAGGAACAGGTGGCCTACAGCGTCGGCGACGACACCCGTTTGTTCGTCGTGCAGGGCGCCGGCGACTGGTTCGATGCCGGC CAGCCGCTGCGCATCGTCGCGCCGGTCAGCGGGGTCGCCAGCAGTCCCTGGCAGATCGTGCTGTTCGTCGCCGACGGCAGCGACAACACCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACAGGAAGGAGCCGCCAATGCCCGAAGGGAGTGCAGGGCCTTTTTCCCAGGCGTACCAGGCGCAGCCGCTCAGCACGGCGTTCCGCCAGGCCTGGCAGGA ATGGCTGGAGGCCTGGGGCGCCCTCGACCGGGACGCACAGGATGTGCCGCGGATGGTCGAGCGCGCCCTCGAACTGTCCACCCGTATCACCCGGCGTCTG TGGCGCAGCGCCTTCGCCAGCGTCGGCGACGCGGCGGGCGTGCAGGTCAAGGCGATGGTCTATGCCTTCGTCGCCCTGGTCGACGAGACCCTGGTCTTCA GCGCCTGGCCGGGGCAGGGCGCCTGGCAGGAAAAACCGCTGGAGTCGCATCTCTACGGCAGTCGCCAGGCGGGCGAATACCTGCCGCTGGCGATCAAGCG CCTGCTCGACGAACGCGCCCCGGCCAGTCGCGACCTGGCCAACGTCTACCTGCAATGCCTGATCCTCGGCTTCCGCGGTCGCTTGCGCGGGCCGCGCGGC
Amino Acid Sequence
>type VI secretion protein
MQLLPQHFQLQGLRAEALAARIGQACNPWFWGVTALELDPSALCAGQVRVLHLEAILPDGLPVSVQAGVDAPLEFDLETALAAAEGPLLNVHLAVSPLWR AGQLLPLKGRLQSRVGAPLPDLASGEHPEPITVWRASLRLVGDDGKADSVCLPLLRVAKEGGAYVSLPYVPPTPLILPESPLGRRVQSLCARAREKALFL GGRLRLAQQAGNQDDAVEIRRQLAALWTRLPEVEGLLASRAASPLALHGSLLGLAGAWAALDPLAGVPAFEALDFLDLRRGYEPLLDWLERAIESIRAGY RCLPFEQEEQVFSVRLPDPAPRQRLVVGLRMPAGAGEQAAADWLERAIVASDPHLPLLARQRMSGLARQPMNRQEQVAYSVGDDTRLFVVQGAGDWFDAG QPLRIVAPVSGVASSPWQIVLFVADGSDNT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site