Pseudomonas aeruginosa 213BR, IAK_RS0100450

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome. [Details]
DNA Sequence Upstream of Gene
ACGTCAATGAGGACGACACCATGCAGAAACTGATCGTCGCGCTGTTCGGGCTGCTGCTCGCCGCCTGTTCGTCCAGCCCGCCGGAAACCCCGCCGACCCG GGTGGTGATCTGGCTCCACGCCGCACCGAACCTCAACCCGTCCGCCGCCGGCCAGGCGGCGCCGCTGCGCCTGCGGCTGTACGAGCTGAAGAAAGACACC GCGTTCGGCCGCGCCGACTACTTCGCCCTCACCGACAACGCCCAGTCGACCCTCGGTGGCGACCTGGTGGAGCAGGACGAGTTCCTCCTGCGTCCGGGCG AGGAACGGCGCATCGAACGCACGCTCGACGAGCAGACCCGCCAGCTCGGTTTCGTCGCCGCCTACCGCGACCTCGACCGCGCCACCTGGCGCCAGGTCCT CGACGTGCCGGGGCAACGCACCAGCCATCTCGACATCACGCTCGGCGCGCAGGCCATCGGCATCGTCGCGCGTCCCGCGCCCTGAACCTTCGGAGTCCCT
DNA Sequence for Gene
>IAK_RS0100450
ATGTCCTGGAATAACCGCGTGGTGTGGTCCGAAGGCATGTTCCTGCGGCCACAACATTTCCAGCAGCACGACCGCTACCTGGAAACCCTGGTGGATGGCC GCTGCCGCTCGCTCCTGGCGGGCGGCTGGGGCTTTTCCGAGCTGAAGCTGGACGATGCCCTGCTGACCCAGGGCAAGCTGGCCATCGTCAGCGCCCGCGG CGTGCTGCCGGATGGTACGCCGTTCAACATCCCCGCCGACGATCCGGCGCCGGCGCCGCTGAATGTCGAGGAAAGCCTGCGCGATGGCATCGTCTACCTC GGCCTGCCGCTGAAGCGGGTCGGCACCCGCGACACGGTAGAGGAGGGCGAGGCCCTCGGCGGCGCCCGCTACGTCAGCCAGGTGCAGGAAGTGCGCGACG ACAATGCCGCCTTCGAGAGCCGCGCCCCGGTGGCCCTGGGCAGCCAGGCGTTCCGCCTGCTGACCGAGCGCGACGGCCTCGGCGAATACGCCGCGGTGGG CGTCGCGCGGGTCCGCGAGAAGCGCGCGGACCAGGCCCTGAGCCTGGACGAGGACTACCTGCCGCCGGTGCTCGACATTGCCGCCGCGCCGCCCCTGGCG TCCTTCGCCAAGGAGCTGCTGGGCCTGCTCCACCAGCGCGGCGAAGCCCTCGCCGGGCGGGTGGTGGCATCCAGCGCCGGGGGCGCCTCGGAAATCGCCG ACTTCCTGCTGCTGCAACTGGTCAACCGCGCCGAGGCCCTCACCGGTCACCTGTCCCGCGTGCGCCCGCTGCACCCGCAGGAGCTGTACCGCGAACTGGT GGCCCTGGCCGGCGAGTTCTGCACCTTCACCGCCAGCCAGCGGCGTCCCGAGGAGTACCCGGTGTACAACCACGACGACCTGGCCGCCAGCTTCGCCCCG GTGATGCTCGCCCTGCGCCAGGCGCTGGCGACGGTGATCGACGCCAAGGCGATCGCCATCCCGATCGTCGAGAAGGCCTACGGCGTGCACGTCGCGATGC TCAGCGACCGCAGCCTGATCGACAACGCCAGCTTCGTCCTGGTGGTGCGCGCCGACGTCCCCGGCGAGAGCCTGCGCGGGCACTTCCCGCAGCAGGCCAA GGTCGGCTCGGTGGAGCACATCCGCGACCTGGTCAACCTGCAACTGCCGGGTATCGGCCTGCTGCCGATGCCGGTGGCGCCGCGGCAGATCCCCTACCAC GCCGGCTCCACCTATTTCGAACTGGACCGCGGCAGCGCGCATTGGAAGCAGCTGACGCACTCCGGCGGCTTCGCCTTCCACATCGCCGGCCAGTTCCCCG GGCTGAACCTGGCCTTCTGGGCCATTCGAGGATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAACGATGCCTCCCATCGACGATCCCTTCGGCACCCCGGCCGGCGGCGGCAACGGAAGCCCGCCCGACGACCGCACCATGATCATGCCGCGTCCCGGCG GCCGCGCCCCGGAACCGGCCGGCGGCCCCCGCGGCGGCGATCCCTACACGCCGCCGCCGATGGCCAGCCTGGCGCCGCTGAGCGGCCGCGGCGACGGCCT CAACCCGCTGGAGCAGGCCGCCGGCCCACTGCTGGCGATGCTCACCCGCCTGCGCAACACCATCGCCCATCCGGCGCCGGCCAGCCTGCGCGCGCAACTG CTCGGCTACCTGCGCCAGTTCGAGGAGAAGGCACGCCAGGCCGGCGTGGCGCCGGACGAAGTGATGCTGGCGCGCTACGTGCTCTGCACCGCCCTCGACG AAGCGGTGCTCAGCACGCCGTGGGGCAGCACCAGCGACTGGGGCAAGCAGAGCCTGCTGATCACCCTGCACAACGAGGCCTGGGGCGGCGAGAAGGTCTT
Amino Acid Sequence
>type VI secretion protein
MSWNNRVVWSEGMFLRPQHFQQHDRYLETLVDGRCRSLLAGGWGFSELKLDDALLTQGKLAIVSARGVLPDGTPFNIPADDPAPAPLNVEESLRDGIVYL GLPLKRVGTRDTVEEGEALGGARYVSQVQEVRDDNAAFESRAPVALGSQAFRLLTERDGLGEYAAVGVARVREKRADQALSLDEDYLPPVLDIAAAPPLA SFAKELLGLLHQRGEALAGRVVASSAGGASEIADFLLLQLVNRAEALTGHLSRVRPLHPQELYRELVALAGEFCTFTASQRRPEEYPVYNHDDLAASFAP VMLALRQALATVIDAKAIAIPIVEKAYGVHVAMLSDRSLIDNASFVLVVRADVPGESLRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPMPVAPRQIPYH AGSTYFELDRGSAHWKQLTHSGGFAFHIAGQFPGLNLAFWAIRG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site